Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02882 ATGAAATTTCGTTTGCGGCTAACAAAGCTAGCAAGCTATGGAAGGCCGTTTCCAAATTTCCAACAATTCTCTTCAGCCCTTCACCCCAACAACGTTGTTACTTGGACAACCCTCATCACCCAACTCTCCCACCTCAACAAACCCTTCCAAGCCTTAACCCATTTTAACCGCATGCGAAACACTGGCATATACCCAAATCAATTCACTTTCTCAGCAATCTTACCCTCATGTGCTCATACCAAACTCCTCACCCATGGTCAACAAATGCACTCTTTGATTTTTAAACATGGCTTTTTAAATGATACATTTGTAGCCACCTCGTTACTTGACATGGAGGTTCTTTGCCAAGATTCACTTGATCCCGATCAAGTGACTTTTTCAAGTGTGTTGAGTGCTTGTGCTGGTGTTGTTGATTTAAATTTTGGGATTCAAGTGCATGGGAATATTGTTAAGCGTGGTTTGATTTCTTTGGTTTATGTGAATAACTCTTTGGTGGACATGTATTGTAAATGTGGAATGTTTGATGATGCAACCAAGTTGTTCTATAGCGCAGGAGATAGAGATGTTGTTACGTGGAATGTGATGATCATGGGATGCATTCACAATGAAAATTTTGAACAAGCTTGCCGGTTTTTCAATGCCATGGTAAGGGAAGGCGTAGTACCTGATGGGGCTTCATACTCTTCCATTATTCATGCTTCTGCAAGTATTGCAGCATTGGCACAAGGCTCCTTGATCCATGCCCATGTACTAAAAACTGGGCATATGAAAAACGCTTGTGTTTCGAGTTCATTGGTGACAATGTATGGCAAATGTGGGAACTTGTTTGATGCTTATAGGGTCTTCCAAGAAACCGAGGATCGTAATGTGATCTGTTGGACGGCCATGATAGCAGTTTGCCACCAACATGGCTGTGCAAATGAAGCAATTGAGTTATTTGAGGAGATGCTTAAAGAGAGTGTTGTGCCAGAATACATTACTTTTGTCTCTGTGCTGTCAGCATGCAGCCATACTGGAAAGGTTGATGATGGTTTTAAGTACTTCAATTCTATGGCTAACATCCATAACATTAAACCCGGACCTGAACATTATGCTTGCATGGTTGACTTGCTTGGTCGTGTTGGTCGATTGGAGGAGGCATGGAACTTTATTGAATCGATGCCGATTAAGCCTGACTCGTCTGTTTGGGGGGCTTTGCTCGGAGCATGTGGAAAATATGGTCATGTTGAAATGGGGCGAGAGGTTGCGGAGAGGCTTTTCAAGTTGGAACCAGATAATCCAGGTAACTATGTGTTGCTTTCTAATATCTATACACGACACAGGATGTTGGATAAAGCTGATGAAGTCAAGCGATTGATGGGGATCAATAAGGTAAGGAAAGATATTGGATGTAGTTGGATCGATGTTAAGAACAAGACTTTTGTATTTACTGTGAATGATAGGTCACATTCAAGGACACGTGATATTTATGAGATGTTGCAAAATTTGAAGGAGTTGATAAAGAAGAGAGGATATGTGGCTGAGAAGCAGTTTGCAACTAACATTGTAGAAGGGTCTGAAGAGCAGAGTTTGTGGTGTCATAGTGAGAAATTAGCTCTTGCATTAGGTCTTCTGGTTCTCCCAGCTGGATCTCCAATAAGGATAAAGAAGAATTTGAGGACTTGTGGTGATTGTCATACTGTTATGAAGTTTGCTTCTGAGATTTTTCGAAGGGAAATTATTGTGAGAGATATCAACAGGTTTCACCGATTCACAAATGGCTCGTGCTCTTGTAGAGATTATTGGTGA 1788 0.4133 MKFRLRLTKLASYGRPFPNFQQFSSALHPNNVVTWTTLITQLSHLNKPFQALTHFNRMRNTGIYPNQFTFSAILPSCAHTKLLTHGQQMHSLIFKHGFLNDTFVATSLLDMEVLCQDSLDPDQVTFSSVLSACAGVVDLNFGIQVHGNIVKRGLISLVYVNNSLVDMYCKCGMFDDATKLFYSAGDRDVVTWNVMIMGCIHNENFEQACRFFNAMVREGVVPDGASYSSIIHASASIAALAQGSLIHAHVLKTGHMKNACVSSSLVTMYGKCGNLFDAYRVFQETEDRNVICWTAMIAVCHQHGCANEAIELFEEMLKESVVPEYITFVSVLSACSHTGKVDDGFKYFNSMANIHNIKPGPEHYACMVDLLGRVGRLEEAWNFIESMPIKPDSSVWGALLGACGKYGHVEMGREVAERLFKLEPDNPGNYVLLSNIYTRHRMLDKADEVKRLMGINKVRKDIGCSWIDVKNKTFVFTVNDRSHSRTRDIYEMLQNLKELIKKRGYVAEKQFATNIVEGSEEQSLWCHSEKLALALGLLVLPAGSPIRIKKNLRTCGDCHTVMKFASEIFRREIIVRDINRFHRFTNGSCSCRDYW 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02882 595 Pfam DYW family of nucleic acid deaminases 504 595 IPR032867 GO:0008270
Car03g02882 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Car03g02882 595 Pfam PPR repeat family 31 78 IPR002885 -
Car03g02882 595 Pfam PPR repeat family 187 233 IPR002885 -
Car03g02882 595 Pfam PPR repeat family 288 336 IPR002885 -
Car03g02882 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Car03g02882 595 Gene3D Tetratricopeptide repeat domain 20 114 IPR011990 GO:0005515
Car03g02882 595 Gene3D Tetratricopeptide repeat domain 260 533 IPR011990 GO:0005515
Car03g02882 595 Gene3D Tetratricopeptide repeat domain 115 259 IPR011990 GO:0005515
Car03g02882 595 Pfam E motif 406 468 IPR046848 -
Car03g02882 595 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 10 117 - -
Car03g02882 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 31 65 IPR002885 -
Car03g02882 595 Pfam PPR repeat 162 182 IPR002885 -
Car03g02882 595 Pfam PPR repeat 364 387 IPR002885 -
Car03g02882 595 TIGRFAM PPR: pentatricopeptide repeat domain 291 323 IPR002885 -
Car03g02882 595 TIGRFAM PPR: pentatricopeptide repeat domain 190 223 IPR002885 -
Car03g02882 595 TIGRFAM PPR: pentatricopeptide repeat domain 33 66 IPR002885 -
Car03g02882 595 PANTHER OS07G0578800 PROTEIN-RELATED 112 588 IPR045215 GO:0003723|GO:0009451
Car03g02882 595 PANTHER OS07G0578800 PROTEIN-RELATED 10 117 IPR045215 GO:0003723|GO:0009451
Car03g02882 595 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 112 588 - -
Car03g02882 595 SUPERFAMILY TPR-like 253 447 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02882 Car-Chr3 74140273 74142198 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02882 17 595 Glycoside Hydrolase AT3G49170 36.120 1.87e-140 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02882 - - lja:Lj1g3v4807720.1 949.118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02882 03 74140273 74142198 Car03g02882 03 74140273 74142198 ECH