Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02877 ATGAAAATGATGAAGCTGACAGTGGTGCTCCTTGTGGTGTTAaccaccaccaccaccaccgccacTGCATCAGATCCAGATCCTCTTCAAGACCTCTGTGTTGCAGACCTTTCCTCCGCGGTTAAGGTGAATGGATTCACATGCAAATTGGCATCCAATATAAATGCAACAGATTTCTCGTCGAGCATACTATCCAAACAAGGTGCAACAAACAACACATTTGGTTCCCTAGTAACAGGAGCCAACGTTGAGAAAATCCCAGGACTGAACACCCTTGGTGTTTCAATGTCACGCATTGACTATGCTCCAGGTGGACTCAATCCACCTCACACACACCCACGTGCCACAGAGATTGTGTTTGTACTTGAAGGTCAATTAGATGTTGGGTTCATAACAACAGCAAATGTGTTAATATCAAAGACTATATACAAAGGTGATATATTTGTGTTCCCTAAAGGCTTAGTTCATTTCCAAAAGAACAATGGTTTGGAACCTGCTTCAGTCATTGCAGCATTTAATAGTCAATTGCCTGGGACAGTGTCTATTCCTCTTACTTTGTTTGCAGCCACACCACCTGTTCCAGATAATGTTTTGACTAAAGCATTCCAAATTGGTACCAAGGAGGTTCAGAAAATTAAGTCTAAGCTTGCACCCAAGAACTAG 663 0.4042 MKMMKLTVVLLVVLTTTTTTATASDPDPLQDLCVADLSSAVKVNGFTCKLASNINATDFSSSILSKQGATNNTFGSLVTGANVEKIPGLNTLGVSMSRIDYAPGGLNPPHTHPRATEIVFVLEGQLDVGFITTANVLISKTIYKGDIFVFPKGLVHFQKNNGLEPASVIAAFNSQLPGTVSIPLTLFAATPPVPDNVLTKAFQIGTKEVQKIKSKLAPKN 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02877 220 SMART Cupin_1_3 61 210 IPR006045 -
Car03g02877 220 SUPERFAMILY RmlC-like cupins 25 215 IPR011051 -
Car03g02877 220 Pfam Cupin 64 210 IPR006045 -
Car03g02877 220 Gene3D Jelly Rolls 24 219 IPR014710 -
Car03g02877 220 PRINTS Germin signature 110 130 IPR001929 GO:0030145
Car03g02877 220 PRINTS Germin signature 140 160 IPR001929 GO:0030145
Car03g02877 220 PRINTS Germin signature 173 188 IPR001929 GO:0030145
Car03g02877 220 PANTHER GERMIN-LIKE PROTEIN 12 218 - -
Car03g02877 220 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 12 218 - -
Car03g02877 220 CDD cupin_OxOx 25 216 - -
Car03g02877 220 ProSitePatterns Germin family signature. 105 118 IPR019780 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02877 Car-Chr3 74094565 74096677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02877 8 219 Miscellaneous Gene Families AT3G05930 54.930 7.81e-81 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02877 - - gmx:100791628 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02877 03 74094565 74096677 Car04g00651 04 6458505 6460576 PCT