Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02870 ATGCTATATACAAAAATGACTCCAACAATTCAGCCCCTGGCAACCTTATTATTAGCTTTATCCGCTTCTTTTATTTGGATCGTTGACGCGGAAACAGATCAGCTTACTGAACTAAAGCTTAATTCTCATATCCTTCAGGAGTCTATTGCTAAACAAATTAACCAAAATTCAGGGGCAGGATGGAAAGCTGCTATTAATCCTCGTTTCTCCAATTTTACGGTTGGACAATTCATGCGCCTTCTTGGAGTCAAACAAACACCTGGGAATGAACTGATAAGTATACCTGTTGTAACTCATTCAAAATCATTAAAATTGCCAAAGAATTTTGATGCAAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTTGATCAGGGTCACTGTGGGTCTTGTTGGGCATTTGGTGCCGTTGAATCATTATCAGATCGTTTTTGTATTCATTTAGACGTGAATGTTTCCCTCTCTGTTAATGACATGGTTGCCTGCTGTGGCTTACTTTGTGGGGCTGGCTGTGGTGGGGGGGAACTCTTTGCTGCATGGCTATACTTGACTCACCATGGTGTTGTCACTGAAGAATGTGATCCATACTTTGATGAAATTGGATGTTCCCATCCTGGTTGTGAACCAACATATCGAACTCCCAAGTGTGTTAAAAAGTGTGTAAATGAGAACCTGCTTTGGGAGGAATCAAAGCACTTCAGTGTCAAAGCATATACGCTAAACTCTGATCCGCAAGATATTATGGCAGAAGTTTATAAGAACGGGCCAGTTGAAGTTTCATTCACTGTTTATGAGGATTTCGCTCACTACAAATCAGGAGTTTATAAACACATCACAGGTTACGAACTAGGCGGTCATGCAGTAAAACTGATTGGATGGGGAACAAGTGATGATGGGGAGGACTATTGGCTTCTTGCAAATCAGTGGAATAGAAATTGGGGAGATGATGGTTACTTCAAAATCAAGAGAGGGACAAACGAATGTGGGATTGAAGGTCATGTTACAGCTGGTTTGCCTTCTACCAAAAATCTTGTAATAGAAGAGGTGACTGACATGGGTGCTGATTTTTCATCATGA 1083 0.4109 MLYTKMTPTIQPLATLLLALSASFIWIVDAETDQLTELKLNSHILQESIAKQINQNSGAGWKAAINPRFSNFTVGQFMRLLGVKQTPGNELISIPVVTHSKSLKLPKNFDARTAWSQCSTIGRILDQGHCGSCWAFGAVESLSDRFCIHLDVNVSLSVNDMVACCGLLCGAGCGGGELFAAWLYLTHHGVVTEECDPYFDEIGCSHPGCEPTYRTPKCVKKCVNENLLWEESKHFSVKAYTLNSDPQDIMAEVYKNGPVEVSFTVYEDFAHYKSGVYKHITGYELGGHAVKLIGWGTSDDGEDYWLLANQWNRNWGDDGYFKIKRGTNECGIEGHVTAGLPSTKNLVIEEVTDMGADFSS 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02870 360 SMART pept_c1 105 340 IPR000668 GO:0006508|GO:0008234
Car03g02870 360 Pfam Peptidase family C1 propeptide 45 87 IPR012599 GO:0004197|GO:0050790
Car03g02870 360 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 286 296 IPR025660 -
Car03g02870 360 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 127 138 IPR000169 -
Car03g02870 360 PRINTS Papain cysteine protease (C1) family signature 127 142 IPR000668 GO:0006508|GO:0008234
Car03g02870 360 PRINTS Papain cysteine protease (C1) family signature 288 298 IPR000668 GO:0006508|GO:0008234
Car03g02870 360 PRINTS Papain cysteine protease (C1) family signature 304 310 IPR000668 GO:0006508|GO:0008234
Car03g02870 360 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 29 347 - -
Car03g02870 360 Gene3D Cysteine proteinases 35 347 - -
Car03g02870 360 CDD Peptidase_C1A_CathepsinB 106 339 - -
Car03g02870 360 Pfam Papain family cysteine protease 105 338 IPR000668 GO:0006508|GO:0008234
Car03g02870 360 PANTHER CATHEPSIN B-LIKE PROTEASE 3 29 347 - -
Car03g02870 360 SUPERFAMILY Cysteine proteinases 44 341 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02870 Car-Chr3 74028648 74032578 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02870 K01363 - gmx:100778103 571.237