Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02856 ATGAGGAGAGCTTTCACACTTGTGGATGTGTTTCTGGTACTTGCATTGTTCTGTTGTAGCTCATGGAAAGTGTGGAGCAGCACACTTTGCAAAGAGACAAACTTGGACAAAGTTAGGCCTCACAGTGTCAGTATTACCGAATTCGGTGCTGTTGGAGATGGAATCACTGTCAACACAAAAGCATTTCAGAACGCAATCTTCTACCTAAATTCTTTTTCGGATAAAGGTGGAGCTAAGCTTTTTGTACCAGCCGGTCGGTGGTTAACTGGTAGTTTCGATCTCATTAGCCACCTAACTTTGTGGTTGGACAAGGATGCAGTAATTCTTGGATCAACAAACTTTGAGGATTGGCCGATTGTTGATCCTCTACCGTCTTATGGACGAGGAAGGGAGTTGCCGGGTGGAAGGCATAGGAGCCTAATTTATGGATGCAATTTGACCGATGTTATCATAACAGGTAATGAGGGAATCATTGATGGTCAAGGGAGTATATGGTGGAGCAAGTTTAGGAACAAAACATTGGATTATACGCGTCCGCATTTGGTAGAATTGATGAATTCAACTGGGATTCTCATTTCAAATTTAACCTTCTTGAATTCTCCATTTTGGACCATTCATCCTGTATATTGCAGCCAAGTTACGGTTCAGAATGTCACGATCCTCGCTCCTCTTGATTCGCCAAACACAGATGGGATTGATCCAGattcttccgatgatgtgtgtatCGAAGACTGTTATATAAGCACCGGTGATGATCTAATTGCCATCAAAAGTGGCTGGGATGAGTACGGAATTGCATTCGGTCGTCCCAGCACAAACATTATCATCCACAGGCTTGTTGGGAAAACTCATACAAGCGCAGGGATTGCTATTGGAAGTGAAATGTCGGGGGGTGTATCAAATGTTCGTGCGGAAGATATTCGCTTTGACGATTCATATACTGCAATCAGAATAAAGACTACACCTGGAAGAGGTGGTTATGTTAAAAACATCTATGTCTCTAACATGACATTGGTTAATGTCGATATTGCTATTAGGTTCACTGGTTTATATGGTGATCATCCGGATGATGGTTACGACCCGAATGCTCTACCTGTTATTGAAAAGATTACAATCAAGGATGTGAAAGGAGAAAATATAAAAAAAGCTGGTCTTATAGAGGGTATAGAAGGTGACAATTTTGTTGACATTTGCTTATCAAACATCATCCTTAATAATGTGAGCTCAAACTATCCATGGAACTGCTCTAACGTTAGAGGATACTCTGACTCGGTTTTGCCAGAAGCGTGCGAGCCACTCAAAGAGAGAATATTCCCCGACCATTGTTCAGACTGTTACTATCTGTCGAATCCCCGAGAGAGTTCAAGTAATCGAAAAAGAGCAGGACAAAATTTCACTTGA 1401 0.4118 MRRAFTLVDVFLVLALFCCSSWKVWSSTLCKETNLDKVRPHSVSITEFGAVGDGITVNTKAFQNAIFYLNSFSDKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTNFEDWPIVDPLPSYGRGRELPGGRHRSLIYGCNLTDVIITGNEGIIDGQGSIWWSKFRNKTLDYTRPHLVELMNSTGILISNLTFLNSPFWTIHPVYCSQVTVQNVTILAPLDSPNTDGIDPDSSDDVCIEDCYISTGDDLIAIKSGWDEYGIAFGRPSTNIIIHRLVGKTHTSAGIAIGSEMSGGVSNVRAEDIRFDDSYTAIRIKTTPGRGGYVKNIYVSNMTLVNVDIAIRFTGLYGDHPDDGYDPNALPVIEKITIKDVKGENIKKAGLIEGIEGDNFVDICLSNIILNNVSSNYPWNCSNVRGYSDSVLPEACEPLKERIFPDHCSDCYYLSNPRESSSNRKRAGQNFT 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02856 466 Pfam Glycosyl hydrolases family 28 80 419 IPR000743 GO:0004650|GO:0005975
Car03g02856 466 PANTHER OS07G0245200 PROTEIN 7 449 - -
Car03g02856 466 PANTHER PECTIN LYASE-RELATED 7 449 - -
Car03g02856 466 Gene3D - 21 425 IPR012334 -
Car03g02856 466 SMART pbh1 299 320 IPR006626 -
Car03g02856 466 SMART pbh1 328 349 IPR006626 -
Car03g02856 466 SMART pbh1 271 293 IPR006626 -
Car03g02856 466 SMART pbh1 210 236 IPR006626 -
Car03g02856 466 SMART pbh1 237 269 IPR006626 -
Car03g02856 466 SUPERFAMILY Pectin lyase-like 35 432 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02856 Car-Chr3 73911488 73915423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02856 1 461 Glycoside Hydrolase AT3G62110 67.666 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02856 - - gmx:100782602 796.193