Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car03g02854 | ATGGCTAATAATAACCCAACACAACCTAATGTTGGGTTCATCCCTTCAAACCCAGAACATAGACAGAGTCCAACTCCAAACCCTGACAAGACTCCAATTCCTCCACCTCCAAGTTTTGCAGCAGTGCCTAGATTTCCTCCACCAATATTACATTTGCAGAAAGATCAAGCTACGCCCCATTCCAATGGCAGTCCAGTTCCTCACTTGAGCACACCTCCTGGACCTCCTGTTTTTACTACGCCTGTCCGTCCGGCTGCTGTTCCTTTTCGAACTTCGCCTGCTTCGCCTCAGCCACTTGCTCTTTCTTCGGCCTCTTCTTTGCCAACTTCATCGCCGCCTCATTACACAAATAGATCATCTGACTTGCAGCCACAAGTTTCTGATAGCATAGAGGATCACATTTCACTTGGGGAGTCATCCTTTGTACTTTTTTCAGCTCACAAGGTTTTGAAGCAGAAGAAACAAGCTAATGTACCCAGTTTGGGTTTTGGGGCATTGGTCTCTCCTGGGAGGGAAGTCTCAACAGGCCCACAGGTAATACAGCGTGATCCCCATCGCTGCCAAAGCTGTGGGGCATATGCAAATATATATTGCAACATATTGCTTGGATCAGGCCAGTGGCAGTGTGTTATTTGTCGAAAACTAAATGGAAGTGACGGTGAGTATGTTGCACATAGCAAGGAAGATCTTCATAGGTTTCCTGAACTATCTTCACCAATGGTTGACTTTGTTCAAACTGGGAACAAGAGACCTGGATTTGTTCCAGTTTCAGATTCCAGAATGTCTGCCCCAGTAGTTCTTGTAATAGATGAATGTTTAGACGAACCTCACTTACAACACCTTCAGAGCTCTTTGCATGCATTTGTTGATTCTCTCCCTCCAACAACAAGATTAGGAATTATACTATATGGCCGTACTGTATCAGTGTACGATTTTTCAGAAGATTTAGTTGCATCTGCTGATGTGCTTCCCGGGGAGAAGTCACTGAGTCAAGAATCTCTGAAATTTTTGATTTATGGTACCGGTATTTATTTGTCTCCAATGCACGCTTCTTTGGCCGTAGCGCATTCCATATTTTCATCGTTGAGGCCATATAAGTTGAACATGCCAGAAGCTTCCAGAGATCGGTGCCTAGGAACTGCTGTTGAGATTGCTCTTGCTATAATTCAGGGTCCGTCAGCTGATCTGTCCCGAGGGGTAGTCAAAAGGCCAGGGGGCAATAGTAGAATTATTGTTTGTGCTGGTGGACCGAACACTTACGGGCCTGGATCCGTTCCTCATTCTTTTAATCACCCTAATTATCCTTATATGGAAAAGACAGCATTAAAATGGATGGAGAATTTAGGTCGCGAGGCTCATCGACACAATACTGTGATTGATATTTTATGTGCTGGAACCTGCCCTGTAAGAGTTCCTATTCTACATCCTCTTGCAAAAGCATCGGGTGGAGTTTTGGTTCTTCACGATGATTTCGGAGAAGCCTTTGGCGTTAATTTGCAAAGGGCATCTGCCAGATCAGCAGGCTCCCATGGATTGTTAGAATTGCGCACATCAGATGATATTCTCATTACTCAAGTTGTGGGTCCAGGGGAAGAGTCACATGTAGACACCCATGAATCATTTAAACATGACACCGCTCTTTATATTCAAATGCTGAGTGTTGAAGAGACACAGAGCTTCTCTCTCTCCATGGAAACCAAAGGAGATATCAAAAGTGATTTTGTCTTTTTCCAGTTTGCAATTCAGTATTCAAATGTGTATCAGGCTGATGTCTCGAGGGTCATTACTGTTAGATTGCCAACAGTAGATAGCGTTTCAGGATATCTCGAGAGTGTTCAGGATGAAGTGGCCGCTGTCCTCATTGCAAAGAGAACTTTATTACGAGCCAAAAGCCATTCCGTTGCTGTTGATATGCGATCAACAATAGATGAAAGAATCAAGGATATTGGACTAAAATTTGGCTCCCAATTACCCAAATCAAAACTTCATTGCTTCCCGAAGGAGCTTTCTCTCTTACCGGAGCTACTCTTCCATCTCAGGAGAGGGCCGCTATTGGGATGCATTATTGGCCATGAAGATGAGAGGTCTGTGCTGAGGAACCTGTTTCTAAATGCATCCTTTGATCTATCGCTCAGAATGGTGGCGCCACGTTGTCTAATGCACAGGGAGGGGGGAACTTTTGAGGAGCTACCGGCTTATGATCTTGCTATGCAGTCTGATACTGCTGTTGTACTTGACCATGGTACCGATGTCTTCATTTGGCTGGGTGCTGAACTTGTAGCTGATGAAGGAAAAAGTGCTGCTGCTTTGGCTGCATGCAGGACATTGGCCGAAGAGCTGACCGAATTCCGTTTTCCAGCTCCTCGGATCCTTGCATTCAAGGAGGGTAGCTCTCAAGCTCGATACTTTGTCTCACGTCTCATACCAGCTCATAAGGATCCTCCTTATGAACAGGAGGCAAGGTTCCCACAACTTAGGGCATTAACATCAGAACAGAGAACAAAGCTGAAAAGCAGCTTTGTTCACTTTGATGATCCGAGTTTCTGCGAATGGATGCGAAGTTTGAAGGTCGTGCCACCTCAACCGAGTTGA | 2592 | 0.4502 | MANNNPTQPNVGFIPSNPEHRQSPTPNPDKTPIPPPPSFAAVPRFPPPILHLQKDQATPHSNGSPVPHLSTPPGPPVFTTPVRPAAVPFRTSPASPQPLALSSASSLPTSSPPHYTNRSSDLQPQVSDSIEDHISLGESSFVLFSAHKVLKQKKQANVPSLGFGALVSPGREVSTGPQVIQRDPHRCQSCGAYANIYCNILLGSGQWQCVICRKLNGSDGEYVAHSKEDLHRFPELSSPMVDFVQTGNKRPGFVPVSDSRMSAPVVLVIDECLDEPHLQHLQSSLHAFVDSLPPTTRLGIILYGRTVSVYDFSEDLVASADVLPGEKSLSQESLKFLIYGTGIYLSPMHASLAVAHSIFSSLRPYKLNMPEASRDRCLGTAVEIALAIIQGPSADLSRGVVKRPGGNSRIIVCAGGPNTYGPGSVPHSFNHPNYPYMEKTALKWMENLGREAHRHNTVIDILCAGTCPVRVPILHPLAKASGGVLVLHDDFGEAFGVNLQRASARSAGSHGLLELRTSDDILITQVVGPGEESHVDTHESFKHDTALYIQMLSVEETQSFSLSMETKGDIKSDFVFFQFAIQYSNVYQADVSRVITVRLPTVDSVSGYLESVQDEVAAVLIAKRTLLRAKSHSVAVDMRSTIDERIKDIGLKFGSQLPKSKLHCFPKELSLLPELLFHLRRGPLLGCIIGHEDERSVLRNLFLNASFDLSLRMVAPRCLMHREGGTFEELPAYDLAMQSDTAVVLDHGTDVFIWLGAELVADEGKSAAALAACRTLAEELTEFRFPAPRILAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLRALTSEQRTKLKSSFVHFDDPSFCEWMRSLKVVPPQPS | 863 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car03g02854 | 863 | Pfam | Sec23/Sec24 trunk domain | 266 | 492 | IPR006896 | GO:0006886|GO:0006888|GO:0030127 | |
| Car03g02854 | 863 | Gene3D | - | 174 | 237 | - | - | |
| Car03g02854 | 863 | SUPERFAMILY | beta-sandwich domain of Sec23/24 | 17 | 612 | - | - | |
| Car03g02854 | 863 | MobiDBLite | consensus disorder prediction | 1 | 126 | - | - | |
| Car03g02854 | 863 | PANTHER | PROTEIN TRANSPORT PROTEIN SEC23 | 52 | 863 | - | - | |
| Car03g02854 | 863 | Pfam | Sec23/Sec24 zinc finger | 184 | 222 | IPR006895 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Car03g02854 | 863 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Car03g02854 | 863 | Gene3D | Sec23/Sec24 helical domain | 603 | 722 | - | - | |
| Car03g02854 | 863 | Pfam | Sec23/Sec24 helical domain | 615 | 711 | IPR006900 | GO:0006886|GO:0006888|GO:0030127 | |
| Car03g02854 | 863 | SUPERFAMILY | C-terminal, gelsolin-like domain of Sec23/24 | 716 | 856 | IPR036180 | - | |
| Car03g02854 | 863 | PANTHER | PROTEIN TRANSPORT PROTEIN SEC23 | 52 | 863 | IPR037364 | - | |
| Car03g02854 | 863 | MobiDBLite | consensus disorder prediction | 95 | 126 | - | - | |
| Car03g02854 | 863 | Gene3D | von Willebrand factor, type A domain | 264 | 509 | IPR036465 | - | |
| Car03g02854 | 863 | MobiDBLite | consensus disorder prediction | 66 | 82 | - | - | |
| Car03g02854 | 863 | MobiDBLite | consensus disorder prediction | 21 | 44 | - | - | |
| Car03g02854 | 863 | Pfam | Sec23/Sec24 beta-sandwich domain | 510 | 601 | IPR012990 | - | |
| Car03g02854 | 863 | Gene3D | Severin | 730 | 826 | IPR029006 | - | |
| Car03g02854 | 863 | SUPERFAMILY | Helical domain of Sec23/24 | 614 | 714 | IPR036175 | GO:0006886|GO:0006888|GO:0030127 | |
| Car03g02854 | 863 | CDD | gelsolin_like | 716 | 807 | - | - | |
| Car03g02854 | 863 | SUPERFAMILY | vWA-like | 265 | 497 | IPR036465 | - | |
| Car03g02854 | 863 | CDD | trunk_domain | 258 | 501 | - | - | |
| Car03g02854 | 863 | SUPERFAMILY | Zn-finger domain of Sec23/24 | 174 | 248 | IPR036174 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car03g02854 | - | - | gmx:100781518 | 1483.39 |