Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02833 ATGGATGCGAAGGATATACTTGGATTGCCCAAAAACTCATTCCCATCTTCTGCTGATAAAAAGCCTCGACCTCCCAAAGAGTCTCAGAGAAAACCAGATGGCATTTCACGCGAGGTTTATGCGCTTACGGGTAGAATGCCACCTCTTATGCCTTCTATTGATGCTTCTCAACTGAAAAAAAAGCATCCTCCTCACGAAAAGATCACTTGGCAATGGCTTCCTTTCACCAATTCTGCTCGTAAAGATGATCTTCATCTTTACCATTGGGTTCGAGTAGTCAATGGTGTTCCACCTACTGGGGACTATTCTTTTGCCAAGTATAACAAGTCTGTTGACATTATCAAATACACAGACGAGGAGTACGAAAAGCATTTGACAGATCCTATGTGGACGAAGGAGGAGACAAATGAACTATTCGACTTGTGTGGTAGATTTGATCTCCGTTTTGTTGTAATAGCTGATAGATTTCCATCTTCTCGGACTGTAGAGGAGTTGAAGGATCGATATTATAGTGTGTCGCAGGCTATATTAATTGCTAGGGCTGCATCTTCCGGGGATGTTGCAACACATCCTCTCATTAAGGAACCATATAATGTTTCACAAGAAATGGAGCGAAAACGGGCACTGTCTATGGTGCTCTCCCAAACAAGACAACAAGAGCGAAAAGATGAAGAGGTTCTTGTTGAAGCTAAAAGAATAGCTGAGTTACGGATGGCTTCTAAGGTTACTGAACAGCCTCAATTGGTTGTTGCTTCAAATGCTGATGCAGAAGTTACCGAGAGAGCTGTCCCTGGTGAAACTATATCTCCATCGAATGTGCAACCTCCATCAATGGTTGTGCCTTCTGCGACAGATAATGCTTCTACTCTAGCTTCTCTTCGCATGCTTCGTGTATATTTAAGGACATATGCACTTGATCAAATGGTGCAAGCTTCAAACTCATCTGCTGGACTTCGGACTATCAAACGGGTTGAGCAAACATTGCAAGATCTTGGGGTCAATTTGAAACCAAGGGTTCCAACAAAAGCTGTATGTGCAGAGCATCTTGAACTAAGAAGAGAAATACTAACCTGGCTGAATCTGCAGAAACAGGTGCAATATAAAGAGGCTGAAGGTTCATCTTTCCGTGATGGGTCCTATGGTGAAACACCAGGCACACCTAAGGATCGTACATTTATTCCCGACTCCATGAATTTCGGAGATATCCATAAAACTGTAGTTTCAAGCGAAAGGGTTGGCAAAAAGGACCAAAAACGCAAGGTCCACCTACCTCGGCTCATAAAAGACCTAGAAAACAAAAGGCCTCAGATCTTTAATTTCTCTGGTGCAATGTGGAAAGCGAAAGCTTTTACTTTTGCACAAATTGCAAATGATATCAACTTGTTATCTTTTGCGAACGGGTTAAACAGGACAGGATATTGCGTCTTTACTGTATATCTCCACACTTGTACTTTTACTCTGATTGAAGGTTTGAGTTCAATTAGACCGGTCCGGTCTGAATTTTACAACACACAAGGAACCCTTGAAGTTCTATTTACAACACACAAGGAACCCTTGAAGTTCTATTTACATTGTCACGCCTTATCTTTTTATGACTTATTCATTGTACGTGTTTTTCCAATATTTATTCTTAGGATGCATGCCGTGAAGAGATTGTGGTTGCAAAAACCATGTTCCCGCAATATGTGTACTATTACAACACCACAATTGAACTACATGATTAATACTCACATACACAACAACAACGTAAAATATGCTCACAAACTGTTGGATGAAAACCCTTTATCCTGCAACATTGTTTCCTGGAATATGATTATGACGGCCTATGTTCAACACCATCAAATTGGACTTGCTCATCAACTGTTCGATAAAATGCCCCTTAAAGACGCTGTTTCATGGAACATCATGCTCTCTGGTTTTATGAAAACCAGAAACACAGAGGGACTTTACCAATGTTTCTTGCAAATGGGAAGAGCTGGTGTAGTGCCCAATGACTATACAATCTCCAAATTGCTTAGAGCAGTTATTTGTACTGAGTTGGAAGTTTTGGTGTATCAAGTTCATGCTATGGCTTCTCATTTGGGACTCAACTTGAATGTTTTTGTTGGGTCTTCTTTGATTCGAGCTTATGCGGCTTTAAGGGAAGAAGAAGCTTTAAGTCGAGCATTTGATGATATATCGATGAAAGATGTTACCTCTTGGAATGCTTTGGTTTCTGGTTATATGGAATTGGGAATGATGGTTGATGCTCAAACAGCATTTGATCTAATGCCTCAAAGAAACGTAATTTCATGGACTACTTTAGTGAATGGTTATGTCAAGAACAATCGAGTTAATAAAGCGCGGTCTGTTTTTGACAAAATGAGCGAGAGAAATGTGGTTTCTTGGACGGTAATGATTAGTGGGTATGTGCAAAACAAGAGATTTATGGCTGCATTGAAGCTTTTTCTTCTTATGTTTGAGAGTGGAACTCGTCCCAATCATTTCACATTTTCAAGTGTATTGGATGCATGTGCAGGTTGTTCCTCACTTCTGATGGGGTTACAGGTTCATCTGTGTATTGTCAAGTCCGGCATACCAAATGATGTTATCTGGTTGACCTCACTTGTTGATATGTATGCAAAATGTGGAGATATGGATGCGGCTTTTTGTGTTTTCGAGTCGATTATGGATAAGAATTTGGTATCTTGGAATGCGATAATTGGAGGTTACGCAAGTCATGGGCTAGCTGCACGAGCACTGGAGGAGTTTGATAGGATGAAAAATGTTGGCGTTACACCTGATGAAGTTACATTTGTGAATGTGTTGTCAGCATGTGTCCATGCTGGTCTTGTTGAAGAGGGCGAAAAGCATTTCGCAGCTATGCTGACCGAGTATGGAAAGCCAGCAGAGATGGAGCATTATACTTGCATGGTGGACCTATATGGAAGAGCAGGGAGATTTAATGAAGCAGAAAAACTAATCAAGAGTATGCCATTTGAGCCTGATGTGGTTTTGTGGGGTGCATTACTTGCAGCTTGTGGCCTGCATTCAAATTTGGAACTTGGAGAGTATGCTGCCGAGAGGATTCGCAGACTTGAGAGCAATCATCCTGTTTCTTACTCAATGCTTTCAAAGATCCAAGGTGAGAAAGGAATATGGAGCAGTGTGAATGAACTGAGGGAGAAAATGAAGGAGAGAGGGATTAAAAAGCAGAAGGCAATTAGTTGGCTTGAGTGA 3219 0.411 MDAKDILGLPKNSFPSSADKKPRPPKESQRKPDGISREVYALTGRMPPLMPSIDASQLKKKHPPHEKITWQWLPFTNSARKDDLHLYHWVRVVNGVPPTGDYSFAKYNKSVDIIKYTDEEYEKHLTDPMWTKEETNELFDLCGRFDLRFVVIADRFPSSRTVEELKDRYYSVSQAILIARAASSGDVATHPLIKEPYNVSQEMERKRALSMVLSQTRQQERKDEEVLVEAKRIAELRMASKVTEQPQLVVASNADAEVTERAVPGETISPSNVQPPSMVVPSATDNASTLASLRMLRVYLRTYALDQMVQASNSSAGLRTIKRVEQTLQDLGVNLKPRVPTKAVCAEHLELRREILTWLNLQKQVQYKEAEGSSFRDGSYGETPGTPKDRTFIPDSMNFGDIHKTVVSSERVGKKDQKRKVHLPRLIKDLENKRPQIFNFSGAMWKAKAFTFAQIANDINLLSFANGLNRTGYCVFTVYLHTCTFTLIEGLSSIRPVRSEFYNTQGTLEVLFTTHKEPLKFYLHCHALSFYDLFIVRVFPIFILRMHAVKRLWLQKPCSRNMCTITTPQLNYMINTHIHNNNVKYAHKLLDENPLSCNIVSWNMIMTAYVQHHQIGLAHQLFDKMPLKDAVSWNIMLSGFMKTRNTEGLYQCFLQMGRAGVVPNDYTISKLLRAVICTELEVLVYQVHAMASHLGLNLNVFVGSSLIRAYAALREEEALSRAFDDISMKDVTSWNALVSGYMELGMMVDAQTAFDLMPQRNVISWTTLVNGYVKNNRVNKARSVFDKMSERNVVSWTVMISGYVQNKRFMAALKLFLLMFESGTRPNHFTFSSVLDACAGCSSLLMGLQVHLCIVKSGIPNDVIWLTSLVDMYAKCGDMDAAFCVFESIMDKNLVSWNAIIGGYASHGLAARALEEFDRMKNVGVTPDEVTFVNVLSACVHAGLVEEGEKHFAAMLTEYGKPAEMEHYTCMVDLYGRAGRFNEAEKLIKSMPFEPDVVLWGALLAACGLHSNLELGEYAAERIRRLESNHPVSYSMLSKIQGEKGIWSSVNELREKMKERGIKKQKAISWLE 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02833 1072 Pfam SANT/Myb-like domain of DAMP1 102 176 IPR032563 -
Car03g02833 1072 Pfam PPR repeat 967 991 IPR002885 -
Car03g02833 1072 Pfam PPR repeat 600 626 IPR002885 -
Car03g02833 1072 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 761 795 IPR002885 -
Car03g02833 1072 Gene3D Tetratricopeptide repeat domain 952 1071 IPR011990 GO:0005515
Car03g02833 1072 SMART sant 126 175 IPR001005 -
Car03g02833 1072 Gene3D Tetratricopeptide repeat domain 684 841 IPR011990 GO:0005515
Car03g02833 1072 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 561 1070 - -
Car03g02833 1072 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 561 1070 - -
Car03g02833 1072 MobiDBLite consensus disorder prediction 20 34 - -
Car03g02833 1072 Gene3D - 99 186 - -
Car03g02833 1072 Pfam E motif 1010 1072 IPR046848 -
Car03g02833 1072 Gene3D Tetratricopeptide repeat domain 545 683 IPR011990 GO:0005515
Car03g02833 1072 Gene3D Tetratricopeptide repeat domain 842 951 IPR011990 GO:0005515
Car03g02833 1072 MobiDBLite consensus disorder prediction 1 36 - -
Car03g02833 1072 Pfam PPR repeat 760 789 IPR002885 -
Car03g02833 1072 TIGRFAM PPR: pentatricopeptide repeat domain 895 929 IPR002885 -
Car03g02833 1072 TIGRFAM PPR: pentatricopeptide repeat domain 631 664 IPR002885 -
Car03g02833 1072 TIGRFAM PPR: pentatricopeptide repeat domain 794 827 IPR002885 -
Car03g02833 1072 TIGRFAM PPR: pentatricopeptide repeat domain 968 992 IPR002885 -
Car03g02833 1072 TIGRFAM PPR: pentatricopeptide repeat domain 600 625 IPR002885 -
Car03g02833 1072 TIGRFAM PPR: pentatricopeptide repeat domain 763 794 IPR002885 -
Car03g02833 1072 Pfam PPR repeat family 628 674 IPR002885 -
Car03g02833 1072 Pfam PPR repeat family 892 940 IPR002885 -
Car03g02833 1072 Pfam PPR repeat family 791 839 IPR002885 -
Car03g02833 1072 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 629 663 IPR002885 -
Car03g02833 1072 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 893 927 IPR002885 -
Car03g02833 1072 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 730 760 IPR002885 -
Car03g02833 1072 SUPERFAMILY Homeodomain-like 125 173 IPR009057 -
Car03g02833 1072 CDD SANT_DMAP1_like 130 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02833 Car-Chr3 73700725 73709939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02833 595 771 Glycoside Hydrolase AT3G49170 24.157 5.45e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02833 K11324 - pvu:PHAVU_001G217700g 814.298