Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02808 ATGTCTTCCTCCCGTCGCAATATCAATGGCCGATCACCCCTCGTCAATCCACAGCGTCAAATCACCGCCTTCTTCACCAAAAccccttccccttccccttcccctattccttctcctACTCTCTCCAAATCCAACCCCAAAATAAAACCTAACCCTAACCCTACTCCTTCCCTTACTACACCTTCCCCTCTCAATCCCAAACAACACAAACCCAAACCCCTTCTCATAATCGGCGCTTCTCCTACACCGCCACAACCTTCTCCTTCTCCTTCTCCCTTCGCTGATCAAGTCATTGGCAAAAGGATCAAAGTTTATTGGCCTATTGACGATGCTTGGTACGAAGGTTTCGTCAAATCATTTGATAAGCTTACCTCCAAGCATCGTATTCACTACGACGATGACGAAGAGGAATCCATCGACCTTTCCAAGGAGAAATTCGAATGGATTCAGGAACGTTCTTCGAAGAAGCTTAAACGGCTTCGTCGCGGTTCTTCCCCTATCAGAAAAATGGTGATTGAGGAGAATGTTGTAGAAGATAGTCCTAAAGAGGAAAAAGAAGAACatgatgatgatgatgataatgataatgataatgataatgataatgatGATTCAGATGATGAAGATTGGGGGAAGAATGCTGTATTGgaggatgttggtgatgatgatgatgaagaagaaatggagctggaggatgaaaatgatgttgctgCAGAGAGTGTTAAAGGAAAGACTAATGGCAAGGTTGAACCCAAAAAGCGGAAACTAGGTGAAGCGGCGAAATCAGAGCCTGCAAAAAAGAGCAGAAGTGGAACTGAAGTTAATAGGGTAGCTGTTAAGCTCTCACCATTGGAGCATGTGAATAATTTGGAGGTTAAAAAGACATCTGATGGTGCTGACAATGTTCCAACTGGTGATGCCTCTGAAAGATTTGCGTCCCGCGAAGCTCAGAAGTTTCGCTTTCTGAGAGAAGATCGCAAGGATGCCAACCGAAGACATCCAGGAGATGAAAATTATGATTCAAGAACTCTCTACGTGCCTCCAGATTTCTTGAGGAGTTTGACCGAAGGCCAGAGACAATGGTGGGACTTCAAGTCAAAACACATGGACAAAGTTTTGTTTTTCAAGATGGGTAAATTTTATGAGCTTTTTGAAATGGATGCACACGTAGGAGCAAAAGAGCTTACCTTGCAGTATATGAAGGGAGAGCAACCTCATTGTGGATTTCCAGAGAGGAATTTCTCAACTAATGTGGAGAAACTAGCTAGGAAGGGTTATCGAGTTCTTGTTGTAGAGCAGACTGAAACACCTGAACAGCTGGAGCTTCGTCGCAAGGAGAAGGGCTCTAAAGATAAGGTTGTGAGACGGGAAATATGTGCCGTGGTGTCAAAAGGCACATTAACGGATGGGGAGTTCATGTCAGCAAATCCCGAAGCTGCATATTTAATGGCACTGACTGAGCACCATGGGAACCATCCAAATGAAATGTCAGAGCGCACCTACGGTGTTTGTGTGGTTGATGTTACCACAAGCAGAGTCATTATTGGGCAGTTCAACGACGACTCGGAGTGCAGTCACTTATGCTGTATCTTGTCTGAGATCAGACCGGTTGAAATTGTAAAACCTGCTAAAATACTCAGTGCTGAAACAGAAAGGGTACTGCTGAAACACACCAGAAACCCTCTAGTGAATGAATTAATTCCAATTGTGGAATTCTGGGATGCTGACAAAACTGTAGATCAATTAAAGAGAATTTATGGGCACAATAATGATGTTAGTGATCAAGATGGTGGATTAGACTGTCTGCCAGATGTTTTACTGGAGCTCGTGAAAACAGGTCATAATAGCAGAAGTGCACTTTCAGCCCTTGGCGGTGCTCTCTATTATTTGAAACAGGCTTTCCTAGATGAGCAGTTGCTTAGATTTGCACAGTTTGAGTTGCTTCCATGCTCTGTTTTCAGTGGTTTTGCTTCAAAACCATACATGGTTCTTGATGCAGCAGCCTTGGAGAATCTTGAGATTTTTGAGAATAGCAGAAATGGAGAGTCTTCAGGCACGCTCTATGCTCAATTAAACCAATGTGTTACGGCATTTGGGAAGAGACTGCTAAAGTCATGGCTTGCAAGACCATTATGTCATGTGGAATCAATTAAGGAACGCCAGGAAGCTGTTGCAGGTTTAAAGGGAGTTAATCTACCTCACGCACTAGAATTTCGAAAGGAATTATCAAAGCTACCTGACATGGAGCGGTTGCTCGCACGGGTGTTCTCTACTAGTGATGCTAGTGGAAGAAATGCTAATAAAGTGGTTCTGTATGAGGATGCATCAAAGAAACAGCTGCAAGAGTTTATTTCAGCTCTGCGTGGTCTTGAAGTAATGGCACAAGCTTGCTTGTCACTTAGTGTCATTTTGAATGATGTCAAATCTAGACAACTTAGTCATCTTTTAACACCTGGTAAAGGTCTTCCTGATGTTTGCATGGATCTGAATCATTTCAAGGATGCCTTTGATTGGGTGGAAGCCAATAACTCCGGCCGAATAATACCTCATGAAGGAGCTGACATAGAGTATGATTCAGCTTGTAAGGCAGTTAAAGAGATTGAGTCCAGTTTATTAAAGCATCTCAAGGAACAGAGGAAATTACTTGGAGGCACATCAATCTCTTATGTCAATATTGGAAAGGACACATACCTATTGGAAGTTCCGGAAAACTTGTGTCAGAATATTCCTCGGGATTATGAGTTGCGTTCATCCAAAAAAGGATTCTCAAGGTATTGGACTCCAGATATTAAATCGCTTTTGAGAGAGCTCTCGGGAGCTGAATCTGAAAGGGAGTCCTTATTGAAAAGTACATTGCAGAGATTGATTGGGCGTTTTTGTGAACATCACACCCAGTGGAAGCAGCTGGTGTCTGCAACTGCTGAACTGGATGTTTTGATCAATTTAGCTATTGCCAGTGATTACTATGAAGGACCAAAATGCAGACCGAGTTTTGTTGGCACCTTATGTACAAATGAAGCTCCATACCTCTATGCTAAAAGCCTGGGACACCCAGTTATTAGGAGTGATTCCTTAGGAAAGGGTGCATTTGTACCTAATGACATAACAATTGGTGGTCCAGATCACGCCTCCTTTATTCTTCTTACAGGTCCTAACATGGGTGGGAAGTCAACCCTTCTTCGCCAAGTTTGCATGGCTGTGATTTTGGCCCAGGTAGGGGCAGATGTCCCCGCAGAAAGTTTTGAGTTGTCTCCTGTGGACCGAATTTTTGTTCGGATGGGCGCCCGAGATAATATCATGGCTGGCCAAAGTACATTTTTAACTGAGCTTTCAGAAACTGCAACAATGCTGTCATCGGCAACTCGTAATTCGTTGGTGGCTCTGGATGAGCTTGGGCGAGGGACCTCAACATCTGATGGACAAGCCATTGCGGAATCAGTATTAGAACATCTTGTACGTAGGGTGCAGTGTCGTGGATTGTTTTCTACACATTATCATCGATTGGCTATAGATTATCTCAAAGATCCCAAGGTCTGTCTCTGTCACATGGCATGCCAAGTTGGTAGTGGAATTGAAGGTTTGGATGAAGTCACCTTTCTTTACAGGCTGACCCTTGGTGCTTGCCCCAAGAGCTATGGTGTTAATGTTGCTCGATTAGCTGGACTACCGACCTCTGTGCTTCAGAAGGCTGCTGCCAAGTCTAGAGAATTTGAGGCCTCTTATGGTAAATGCAGAAAAGGATCTTCTGAAACAAATTCTTTGAATCAAAGTTGGGTTGATGAGATAATAGTTATCATACAAAAATTGAACAATACTGCTACAAATTTGAGTTGCCAGGAAACTGTTTGTGATCCTTCCCTAAGAAAACTTCAGCGTAAGGCGAGAAAACTGCTACAACGATGCTAA 3906 0.4178 MSSSRRNINGRSPLVNPQRQITAFFTKTPSPSPSPIPSPTLSKSNPKIKPNPNPTPSLTTPSPLNPKQHKPKPLLIIGASPTPPQPSPSPSPFADQVIGKRIKVYWPIDDAWYEGFVKSFDKLTSKHRIHYDDDEEESIDLSKEKFEWIQERSSKKLKRLRRGSSPIRKMVIEENVVEDSPKEEKEEHDDDDDNDNDNDNDNDDSDDEDWGKNAVLEDVGDDDDEEEMELEDENDVAAESVKGKTNGKVEPKKRKLGEAAKSEPAKKSRSGTEVNRVAVKLSPLEHVNNLEVKKTSDGADNVPTGDASERFASREAQKFRFLREDRKDANRRHPGDENYDSRTLYVPPDFLRSLTEGQRQWWDFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELTLQYMKGEQPHCGFPERNFSTNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVRREICAVVSKGTLTDGEFMSANPEAAYLMALTEHHGNHPNEMSERTYGVCVVDVTTSRVIIGQFNDDSECSHLCCILSEIRPVEIVKPAKILSAETERVLLKHTRNPLVNELIPIVEFWDADKTVDQLKRIYGHNNDVSDQDGGLDCLPDVLLELVKTGHNSRSALSALGGALYYLKQAFLDEQLLRFAQFELLPCSVFSGFASKPYMVLDAAALENLEIFENSRNGESSGTLYAQLNQCVTAFGKRLLKSWLARPLCHVESIKERQEAVAGLKGVNLPHALEFRKELSKLPDMERLLARVFSTSDASGRNANKVVLYEDASKKQLQEFISALRGLEVMAQACLSLSVILNDVKSRQLSHLLTPGKGLPDVCMDLNHFKDAFDWVEANNSGRIIPHEGADIEYDSACKAVKEIESSLLKHLKEQRKLLGGTSISYVNIGKDTYLLEVPENLCQNIPRDYELRSSKKGFSRYWTPDIKSLLRELSGAESERESLLKSTLQRLIGRFCEHHTQWKQLVSATAELDVLINLAIASDYYEGPKCRPSFVGTLCTNEAPYLYAKSLGHPVIRSDSLGKGAFVPNDITIGGPDHASFILLTGPNMGGKSTLLRQVCMAVILAQVGADVPAESFELSPVDRIFVRMGARDNIMAGQSTFLTELSETATMLSSATRNSLVALDELGRGTSTSDGQAIAESVLEHLVRRVQCRGLFSTHYHRLAIDYLKDPKVCLCHMACQVGSGIEGLDEVTFLYRLTLGACPKSYGVNVARLAGLPTSVLQKAAAKSREFEASYGKCRKGSSETNSLNQSWVDEIIVIIQKLNNTATNLSCQETVCDPSLRKLQRKARKLLQRC 1301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02808 1301 Pfam MutS domain III 668 983 IPR007696 GO:0005524|GO:0006298|GO:0030983
Car03g02808 1301 MobiDBLite consensus disorder prediction 166 183 - -
Car03g02808 1301 Gene3D - 662 983 - -
Car03g02808 1301 PANTHER DNA MISMATCH REPAIR PROTEIN MSH6 254 1261 - -
Car03g02808 1301 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 254 1261 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Car03g02808 1301 MobiDBLite consensus disorder prediction 77 91 - -
Car03g02808 1301 Gene3D - 94 145 - -
Car03g02808 1301 MobiDBLite consensus disorder prediction 184 211 - -
Car03g02808 1301 Pfam MutS domain I 357 470 IPR007695 GO:0005524|GO:0006298|GO:0030983
Car03g02808 1301 Pfam MutS domain V 1047 1237 IPR000432 GO:0005524|GO:0006298|GO:0030983
Car03g02808 1301 SUPERFAMILY DNA repair protein MutS, domain III 665 989 IPR036187 -
Car03g02808 1301 Gene3D DNA repair protein MutS, domain I 312 474 IPR016151 GO:0005524|GO:0006298|GO:0030983
Car03g02808 1301 MobiDBLite consensus disorder prediction 1 95 - -
Car03g02808 1301 SUPERFAMILY DNA repair protein MutS, domain II 476 677 IPR036678 GO:0005524|GO:0006298|GO:0030983
Car03g02808 1301 SUPERFAMILY DNA repair protein MutS, domain I 343 466 IPR016151 GO:0005524|GO:0006298|GO:0030983
Car03g02808 1301 Coils Coil 930 950 - -
Car03g02808 1301 MobiDBLite consensus disorder prediction 155 274 - -
Car03g02808 1301 Gene3D - 994 1271 IPR027417 -
Car03g02808 1301 MobiDBLite consensus disorder prediction 218 234 - -
Car03g02808 1301 Pfam MutS family domain IV 852 942 IPR007861 GO:0005524|GO:0006298|GO:0030983
Car03g02808 1301 Gene3D MutS, connector domain 479 659 IPR036678 GO:0005524|GO:0006298|GO:0030983
Car03g02808 1301 PIRSF Msh6 2 1283 IPR017261 GO:0006298|GO:0030983
Car03g02808 1301 Gene3D - 828 959 - -
Car03g02808 1301 SMART mutATP5 1043 1235 IPR000432 GO:0005524|GO:0006298|GO:0030983
Car03g02808 1301 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1006 1238 IPR027417 -
Car03g02808 1301 Pfam MutS domain II 481 634 IPR007860 GO:0005524|GO:0006298|GO:0030983
Car03g02808 1301 SMART DNAend 682 1023 IPR007696 GO:0005524|GO:0006298|GO:0030983
Car03g02808 1301 MobiDBLite consensus disorder prediction 235 270 - -
Car03g02808 1301 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02808 Car-Chr3 73513062 73522548 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02808 K08737 - gmx:100811104 1982.99