Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02787 ATGGCATCTGCACCTTCCATGTCAGTTTCTTTGGAGTGTGTGAACGTGTGCAATTTGTGGAGAGGGGATGGAAATGGAAGATATGATTGTAGTCTTCTATCGTGTGCGTGGAAAGCTCCTAGGGTTCTTACCGGATTTCTTGCTACCACGGCTCATCCTCATCAATATTCTTTGTTGAATGGTCCAAATGGAAGAAGGAACCGGTATAATTTTGCATGTGAAACCTTTAGCACAGTAGGTTCATGTTCCGATGACATGGTTGATATCACATTTCACAATGGATTCTCTAGATCTATGTTGTCTAGATTTGCTCCCAGCCGATGGCAATTACCGTGTTCTTCGGCATTTTCATCAGATACTGCCAGCGAATTTTCACCTGAAAGTTTGTGGGAGGATCTTAAACCCGTGATCTCGTACCTGCCTCCTAAAGAATTGGAGCTAGTCCATAATGCTTTTATGTTATCATTTAAAGCGCATGATGGTCAGAAAAGACGCAGCGGTGAACCCTTCATCATTCATCCGGTTGAGGTTGCACGAATTCTAGGAGAACTTGAACTTGACTGGGAGTCAATTGCTGCTGGATTACTTCATGACACCGTTGAAGATACAAATGTTGTGACTTTTGAGAGGATAGAGGAGGAATTTGGTGCTACTGTGCGCCACATTGTGGAAGGAGAGACTAAGGTGTCAAAACTGGGAAAGTTGAAGTATAAGAATGAAAATGATTCTATTCAAGATGTGAAAGCAGAGGATCTTCGACAAATGTTTCTGGCTATGACAGAGGAGGTTCGAGTTATTATCGTCAAATTAGCAGACAGGCTACATAATATGCGCACTCTATCACATATGCCTCAACATAAACAGACTAGCATTGCACTGGAGACATTACAGGTATTTGCTCCTTTGGCAAAGTTGCTTGGGATGTATCAAATTAAGTCAGAACTAGAAAATCTATCATTTATGTACACAAATGCTGAAGATTATGCTAAGGTGAAGAGAAGAGTTGCCGACTTGTTCAAAGAACACGAGAAAGATCTTTTAGAGGCAAACAAAATATTGTTAAAGAAAATCCAAGATGATCAGTTCTTAGACCTGTTGACAGTTAAAGCGGAAGTCCGTGCTGTGTGTAAAGAGCCCTACAGTATCTATAAAGCTGTGCTCAAATCTAAAAGTTTGATCAATGAGATTAACCAAATTGCACAGCTTCGTATCGTTATTAAACCAAAGCCGTGCATTGGGGTTGGGCCTTTATGCAGTCCACAGCTGATTTGCTACCATGTTCTTGGGTTGATCCATGGAATCTGGACTCCTATTCCTAGATCTATGAAAGACTATATCGCAACCCCTAAACCTAACGGGTACCAGAGTCTTCATACCACTGTGATTCCATTTTTGTATGAGAGTATGTTTAGGCTTGAAGTCCAGATTAGAACAGAAGAAATGGATTTGATAGCTCAGAGGGGAATTGCAGCTCATTATAGTGGTAGAGAATTTGTTACTGGTTTGGTTGGAAGTGCATTGCCCAGTTGTAAAAGCTCACGGGGGAAGACAGTGAGTCTTACGAATGCCAACATTGCACTCAGAATTGGCTGGCTCAATGCAATTAGAGAGTGGCAAGAAGAGTTTGTTGGCAACATGAGTTCTAGGGAATTTGTGGACACTGTTACAAGAGATCTTTTGGGCAGCCGTGTCTTTGTATTTACACCCAGGGGAGAGATTAAGAATCTTCCTCAAGGTGCTACAGTAATTGACTATGCTTATATGATACACACTGAAATTGGCAACAAGATGGTAGCTGCAAAGGTCAACGGCAATCTTGTTTCTCCTGCGCGTGTGCTTGCAAATGCAGAAGTTGTGGAGATAATCACATATAATGCACTTTCCAGCAAATCAGCTTTTCAGAGGCATAAGCAGTGGTTGCAACATGCTAAAACACGTAGTGCGAGACACAAAATAATGAAGTTTCTGAGGGAGCAAGCTGCAAATTCCGCTGCTGATATCACTACAGAAGCAGTTAATGACTTTGTTAGTGATTCTGAAGGGGATAGTGAATCTGAAAATCTGTCAAATGGTTCTGGTGGTTCCAAACATAAGAGGGGGAAAATATTATTGAACGGTGTGGAAATATCAACTTCAGGAAAAAGAAGTGAGACTGTTCTCCAGAGTAAGAATGGAAGTGTTTGGACCCCCAAGGTCAATGGAAAACACAATAAGCATGTGCATCATGCTAGTTTGAAAGGCAAAGGGGACATGATGCTGCAGGGAAACCATGTCGCGAATATGATTCAAGTTAACAATCCAAAATATAAGGAAATCCTGCCGGGTTTAGAAAGTTGGCAAGCCCAGAAAATTGCATCTTGGCACAATATAGAAGGGCACTCCATCCAATGGTTATCTGTAGTATGCATAGACAGAAGAGGCATGATGGCTGAGGTCACTACATCATTGGCCAATGCAGACATAACCATATCTTCTTGTGTGGCTGAGATTGATGGAGGAAGGGGAATGGCTGTTATGTTATTTCACGTGGATGGAAACTCAGAAAATTTGGTGAGTGCTTGCTCTAGAGTAGATCAAATACTGGGAGTTTTGGGGTGGTCTACTGGCTGCAGCTGGCCAAGCTTGATGGAAAACCACGACGTACTTGAATGCTAG 2655 0.4196 MASAPSMSVSLECVNVCNLWRGDGNGRYDCSLLSCAWKAPRVLTGFLATTAHPHQYSLLNGPNGRRNRYNFACETFSTVGSCSDDMVDITFHNGFSRSMLSRFAPSRWQLPCSSAFSSDTASEFSPESLWEDLKPVISYLPPKELELVHNAFMLSFKAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNENDSIQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPQHKQTSIALETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLFKEHEKDLLEANKILLKKIQDDQFLDLLTVKAEVRAVCKEPYSIYKAVLKSKSLINEINQIAQLRIVIKPKPCIGVGPLCSPQLICYHVLGLIHGIWTPIPRSMKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAQRGIAAHYSGREFVTGLVGSALPSCKSSRGKTVSLTNANIALRIGWLNAIREWQEEFVGNMSSREFVDTVTRDLLGSRVFVFTPRGEIKNLPQGATVIDYAYMIHTEIGNKMVAAKVNGNLVSPARVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLREQAANSAADITTEAVNDFVSDSEGDSESENLSNGSGGSKHKRGKILLNGVEISTSGKRSETVLQSKNGSVWTPKVNGKHNKHVHHASLKGKGDMMLQGNHVANMIQVNNPKYKEILPGLESWQAQKIASWHNIEGHSIQWLSVVCIDRRGMMAEVTTSLANADITISSCVAEIDGGRGMAVMLFHVDGNSENLVSACSRVDQILGVLGWSTGCSWPSLMENHDVLEC 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02787 884 CDD TGS_RSH 565 623 IPR033655 -
Car03g02787 884 Gene3D Beta Polymerase, domain 2 325 479 IPR043519 -
Car03g02787 884 CDD NT_Rel-Spo_like 367 487 IPR007685 GO:0015969
Car03g02787 884 ProSiteProfiles ACT domain profile. 797 872 IPR002912 -
Car03g02787 884 SUPERFAMILY ACT-like 796 864 IPR045865 -
Car03g02787 884 Gene3D Hypothetical protein af1432 128 323 - -
Car03g02787 884 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 1 884 - -
Car03g02787 884 Gene3D - 797 865 - -
Car03g02787 884 ProSiteProfiles HD domain profile. 170 277 IPR006674 -
Car03g02787 884 ProSiteProfiles TGS domain profile. 560 623 IPR004095 -
Car03g02787 884 Pfam Region found in RelA / SpoT proteins 377 493 IPR007685 GO:0015969
Car03g02787 884 Gene3D - 557 632 IPR012675 -
Car03g02787 884 SUPERFAMILY Nucleotidyltransferase 328 498 IPR043519 -
Car03g02787 884 MobiDBLite consensus disorder prediction 676 694 - -
Car03g02787 884 Pfam HD domain 152 308 - -
Car03g02787 884 MobiDBLite consensus disorder prediction 676 699 - -
Car03g02787 884 SMART hd_13 166 286 IPR003607 -
Car03g02787 884 Pfam TGS domain 564 623 IPR004095 -
Car03g02787 884 SUPERFAMILY HD-domain/PDEase-like 134 323 - -
Car03g02787 884 SUPERFAMILY TGS-like 551 623 IPR012676 -
Car03g02787 884 CDD HDc 168 299 IPR003607 -
Car03g02787 884 SMART RelA_SpoT_2 377 499 IPR007685 GO:0015969
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02787 Car-Chr3 73334278 73343667 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02787 180 495 EF-hand Containing Proteins AT3G17470 30.368 1.20e-36 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02787 K00951 - gmx:100786637 1521.91