Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02755 ATGAATAACGTGaatagtttggcagaaagagttgtgacactgctaaaagctttttgCCGTTCTGAGAATCACGTTAAGCAGATTCAAGCACAAATCATACTACACAACCTTCAATCAAACACCACCATCACACACCACTTCATCAACGCTTCTCAATCTCATAACCTTCTCAACACCGTTTTACCTCTCTTCTTCACAACCTCCCTCAGTCCAAAACCCCACATTTTCATCTTCAACTCTCTCATCAGAGCCTTCTCCCATTCCCACATTCCCCACATCCCTCTCTCCATATACACCCACATGCACAAAAACTCCATCTTCCCCAACAACTTTACATTCCCTTTCCTCTTCAAGTCACTTTCCGACTCACACCACTTCATTCAAGCTCAATGTGTCTACACCCACGTCGTAAAACTCGGTCATGTTAATGATCTTTATGTCAATAATTCACTTCTTGATGTATATGCTTCATGTGGCCGTTTCGCGCTTTGCCGACAACTGTTCGATGAAATGCCTTACAGAGATGTTGTGTCTTGGACCGTGCTGATCATGGGTTACCGAAATTGTGGGAGATTTGACGAGGCGTTATTTGTGTTTGAACAGATGCAGTATGCGGGTGTGGTTCCGAATCGGGTTACGATGGTGAATGCTTTGGCTGCTTGTGCTAACTCTGGTGCGGTTGAAATGGGGATTTGGATAGAGGATATGATAAGGAGGAATGGGTGGGAATTGGATGTGATTTTGGGGACGGCGTTGATTGATATGTATGTAAAATGTGGGAGAATTGAAGAGGGGTTGAGAGTTTTCAGTAACATGAAGGAAAAGAATGTTTTTACTTGGAATGCTGTTATTAAAGGGTTAGCTTTGGCTAAAAGTGGTGAGGAGGCTATTTTGTGGTTTAATAGGATGGAATTTGATGGTGTTAGAGCTGATGAAGTTACTTTGCTTGCGGTTCTTTCTGCATGTAGTCATTCAGGCTTGGTGGAAAAGGGTAGATTGATCTTTGGTGTTTTGGTTGATGGAAAATATGGATTTCGTCCTAATGTGAAACACTATGCTTGTATGATTGATCTCTTGGCACGGGCTGGTCGATTGCAAGAGGCTTTTGAGGTCATGAGATGTATGCCTTTTGAGGCAACGAAAGCTATGTGGGGATCCTTGTTGGTTGGCTCTAAATCTCAGGGTGACTTGGAATTCAGCGAGTTTGCGGCTAGAAAACTAGTTGAGTTGGAGCCTGATAACACTGCCTATCATGTTCAGCTGTCAAATCTGTATGCAGAGGCGGGAAGATGGAGTGATGTTGAGAGAGTAAGGGGAATGATGAAAGAGAGAGAACTGACCAAGGACTTGGGGTGTAGTTCTGTGGAGGTTGAACACCAACGGCATGTCAGTGAACTCTTGGCATAG 1407 0.425 MNNVNSLAERVVTLLKAFCRSENHVKQIQAQIILHNLQSNTTITHHFINASQSHNLLNTVLPLFFTTSLSPKPHIFIFNSLIRAFSHSHIPHIPLSIYTHMHKNSIFPNNFTFPFLFKSLSDSHHFIQAQCVYTHVVKLGHVNDLYVNNSLLDVYASCGRFALCRQLFDEMPYRDVVSWTVLIMGYRNCGRFDEALFVFEQMQYAGVVPNRVTMVNALAACANSGAVEMGIWIEDMIRRNGWELDVILGTALIDMYVKCGRIEEGLRVFSNMKEKNVFTWNAVIKGLALAKSGEEAILWFNRMEFDGVRADEVTLLAVLSACSHSGLVEKGRLIFGVLVDGKYGFRPNVKHYACMIDLLARAGRLQEAFEVMRCMPFEATKAMWGSLLVGSKSQGDLEFSEFAARKLVELEPDNTAYHVQLSNLYAEAGRWSDVERVRGMMKERELTKDLGCSSVEVEHQRHVSELLA 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02755 468 Pfam PPR repeat family 174 221 IPR002885 -
Car03g02755 468 Pfam PPR repeat family 275 323 IPR002885 -
Car03g02755 468 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 465 - -
Car03g02755 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Car03g02755 468 Gene3D Tetratricopeptide repeat domain 252 464 IPR011990 GO:0005515
Car03g02755 468 Gene3D Tetratricopeptide repeat domain 91 245 IPR011990 GO:0005515
Car03g02755 468 Pfam PPR repeat 344 375 IPR002885 -
Car03g02755 468 PANTHER - 3 465 - -
Car03g02755 468 TIGRFAM PPR: pentatricopeptide repeat domain 250 276 IPR002885 -
Car03g02755 468 TIGRFAM PPR: pentatricopeptide repeat domain 177 210 IPR002885 -
Car03g02755 468 TIGRFAM PPR: pentatricopeptide repeat domain 278 311 IPR002885 -
Car03g02755 468 Pfam E motif 396 456 IPR046848 -
Car03g02755 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
Car03g02755 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02755 Car-Chr3 73124722 73126128 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02755 108 462 Glycoside Hydrolase AT3G49170 33.803 1.46e-63 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02755 - - lja:Lj0g3v0239469.1 722.235