Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02680 ATGACCCGTTTAACGGAAAAGCTCCGTTTGTCTTTCTTTCTCCTCAAACCGACCCGTTTtctctctcttctttctctctctactctccgtctctGCAAGTCCCTTGCTCGTTCTCTACTATCCCAAACCCTACCTTTCTTCTCCATGGACAATCTCTTCTCCGATAACGCCGATTACCTCTCCGACGACTTCGATTCTTCGTACTCCCTCCGTCCTCACCGTCCTCACCGTCGCTTACTTCAAGAAGATGAACGTGATTTCGCCGACGAGAGAGTCTACTTGCTTCCCTACAGGTGGTGGATAGATGCAGAAGGAGTTGAAGGTGATCGTGTAGAAGGTGTTTTGTACACAGTGTGGTCAAACTGTGATTCTGAGTCTGAAATTTTGCTCCATCTCAAGAAGGAAGAGGATCGTGAGAAGATTAAGAATTTGGAGGTGGGTTTTTCAGGTCGTCATTATGCCTTGGTTCCTGAAGGAATTTGGTTGCGTGCTCTCAAAAGGTATAACGATTTTAATAATGCGGTGAAAGATTTTGGGAGCCTCTTCAATGCAGAGGATTGTTTGCCAGATTTGTTCCCCTTGCAAGTTAGGATATTTGTTTCATGGGAAACCAGTTCACTGGTAGCAAAGATAAGCCAAAAGGAAAATTTGTCTGACTTCTACAAGAAAGCTAGTGACATTTTCAATTCTGCATATAAATCATTGTATATTTGGGACTTTTCTGGGCAGACAACCCAGCTTTTAATAAATGACAAAGCTAGGGTGCCAAATGATTCTCCTGGTCAACTTGGAAAAGAGGTTCTTTTGGAGTTACAAGTTCATGGACTTTCAGATTCAACGAGGGGTAGTCGAAGCAATGGGATGATATCAGATAGGTCTCAGATGGAATGTTCTTCCAACAGTGGCCCTGTTATGATGAATGGAGGCACCGACAATGTTATCCCCTATGTAACAACAACAAACAACTATTTTCAAGGCAGTAGCTATAGAGCAGTCCGATCTTTGGGCTTGACAGGATTACAGAATCTTGGAAATACCTGTTTTATGAATAGTGCCCTTCAGTGTTTGGCTCACACCCCAAAGCTGGTTGATTTTTTCCTTGGAGATTATCGTAGAGAGATAAATTATGAAAATCCCTTGGGAATGAATGGAGAACTTGCTTTAGCGTTTGGAGATTTACTTAGAATGCTGTGGATTCCTGGAGCAACACCTGTGGCACCAAGAATGTTCAAGATGAAACTGGCTAACTTTGCTCCTCAGTTTAGTGGTTATATGCAGCATGATTCTCAAGAACTGCTTGCTTTTTTGTTGGATGGACTGCATGAAGACCTTAATCGTGTCAAACGAAAGCCATATCATGAAGTTAAGGATGCAGATGGCCGTCCGGATGAAGAAGTGGCAGAAGAGTATTGGCGAAATCACCTTGCTCGCAATGACTCGATAGTAGTTGATTTGTGCCAAGGCCAGTTCCGGTCAACATTGATTTGCCCTTTTTGCAAGAAGGTTTCTATCACCTTTGACCCTTTTATGTACCTATCTCTGCCATTACCTTCTACAACAATACGGACCATGACTGTGACCGTCATGAACACTGATGGGATCACATTGCCTTCTGCAATTACTGTAACAGTGCCTGAATGTGGAACACTTAAGGATCTTATTGGGGCCTTAACTGCGTCTTGTTCTCTAAGAGATGATGAAACCCTCTTGTTGGCTGAGGTATATAGGAATAGGATTTTTCGGGTATTGGAGGATCCATCTGATTCATTAACTGATATTAGAGATCAAGATAAACTTGTCGCTTACCGGGTGCAAAAGTATACTGAAGGTAGCCTCTTGATTATTTTCACGCATGAACGATTGGTGGAAAGTTTCGGGAAGGAGAGGTTTGAAAATAGACTGTTTGGTACTCCAGTTGTAGCAAGGCTATCCGGCATAGCTTGTGGGTATGATGTTCGTAGAGAGTTTCTGAATTTAATCAATCCATTTCTCATGCAAAATACTGAAGAAACAATAGATGAGTATGATAAGGATGACAATGTTGACGACGACGATATTAAAAACCTAAATGAAGCTGATGACTTGGGTGAAACTAGTAGCTCTGCAGTAATAGGAATTGATGCTGTCTCGAGCAGCGAATCAGAGGATGACACATATTTGTGGACTGACTTTGAATTCTATTTATTATTTTCCGGGAGAGGAAATGAGATTGTTAAGATAACATCAAATGAACCGCTTCCAGTCACAATGTTGTCCGGAAAGCTGGAGGTAGCTGTGGTATGGTCAGATAAGATGCTTAAAAAGTATGACATAAACCTGCTTGATTCATTGCCTGAGGTTTTCAAACCCCAGTTATTCACCAAGAGAACACAAGAATCAATATCTATTTACAAGTGCCTTGAAGCCTTCTTAAGAGAGGAACCTCTTGGGCCAGAAGACATGTGgtactgtcctgcctgcaaaaaacctcagcaagcaacaaaaaagctagacctttggaggttgcctgaaatccttgttattcatttgaagaggttctcatacaaccgattcttcaagaacaagctggaaactttcgttGACTTCCCAATTAATGATCTGGATTTGTCAACCTATGTTGCTCACAGGAGTTTTCCGCTTTCCAACTGCTATATGTTGTATGCAATTATTTGTCACTATGGCGGGTTAGGAGGAGGTCACTATACAGCTTTTGTCCGCTATGGCCATGATAAatggtatgagttcgatgatagcagggttgcccccgcggatgaagacatgataaagactcctgctgcttatgttcttttctacaGGAAAGTTTAG 2826 0.3818 MTRLTEKLRLSFFLLKPTRFLSLLSLSTLRLCKSLARSLLSQTLPFFSMDNLFSDNADYLSDDFDSSYSLRPHRPHRRLLQEDERDFADERVYLLPYRWWIDAEGVEGDRVEGVLYTVWSNCDSESEILLHLKKEEDREKIKNLEVGFSGRHYALVPEGIWLRALKRYNDFNNAVKDFGSLFNAEDCLPDLFPLQVRIFVSWETSSLVAKISQKENLSDFYKKASDIFNSAYKSLYIWDFSGQTTQLLINDKARVPNDSPGQLGKEVLLELQVHGLSDSTRGSRSNGMISDRSQMECSSNSGPVMMNGGTDNVIPYVTTTNNYFQGSSYRAVRSLGLTGLQNLGNTCFMNSALQCLAHTPKLVDFFLGDYRREINYENPLGMNGELALAFGDLLRMLWIPGATPVAPRMFKMKLANFAPQFSGYMQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDEEVAEEYWRNHLARNDSIVVDLCQGQFRSTLICPFCKKVSITFDPFMYLSLPLPSTTIRTMTVTVMNTDGITLPSAITVTVPECGTLKDLIGALTASCSLRDDETLLLAEVYRNRIFRVLEDPSDSLTDIRDQDKLVAYRVQKYTEGSLLIIFTHERLVESFGKERFENRLFGTPVVARLSGIACGYDVRREFLNLINPFLMQNTEETIDEYDKDDNVDDDDIKNLNEADDLGETSSSAVIGIDAVSSSESEDDTYLWTDFEFYLLFSGRGNEIVKITSNEPLPVTMLSGKLEVAVVWSDKMLKKYDINLLDSLPEVFKPQLFTKRTQESISIYKCLEAFLREEPLGPEDMWYCPACKKPQQATKKLDLWRLPEILVIHLKRFSYNRFFKNKLETFVDFPINDLDLSTYVAHRSFPLSNCYMLYAIICHYGGLGGGHYTAFVRYGHDKWYEFDDSRVAPADEDMIKTPAAYVLFYRKV 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02680 941 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 339 354 IPR018200 GO:0004843|GO:0006511
Car03g02680 941 Pfam Ubiquitin carboxyl-terminal hydrolase 338 938 IPR001394 GO:0004843|GO:0016579
Car03g02680 941 SUPERFAMILY Cysteine proteinases 336 940 IPR038765 -
Car03g02680 941 Gene3D Cysteine proteinases 664 941 - -
Car03g02680 941 Gene3D Cysteine proteinases 325 570 - -
Car03g02680 941 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 58 941 - -
Car03g02680 941 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 58 941 - -
Car03g02680 941 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 884 901 IPR018200 GO:0004843|GO:0006511
Car03g02680 941 CDD Peptidase_C19R 794 939 - -
Car03g02680 941 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 338 941 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02680 Car-Chr3 72552362 72560506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02680 734 941 Miscellaneous Gene Families AT4G31670 28.972 3.41e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02680 - K21343 cam:101507058 1856.65