Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02619 ATGGAAGCCGTTCTAGCATCCTGCCATTTATCGACGCCTTTCTCTTCTCACAATCGAACCACATTCTCCTCTTCCAATTCGATCAATTTTTGCTCTTCCCTTTCTTTCAGGAACTCCTTCGCGAAAGATATATGGGGTTTGGTACAGTCGAAGAGCGTATGTGTTAGAAGAACAATGCGTCCAGTTTTTGTGAGGGCTGAAATGTTCGGACAGTTAACCACTGGTCTTGAATCTGCTTGGAACAAGCTCAAAGGAGAAGAGGTTTTGACCAAAGAGAATATTGTGGAGCCTATGCGAGATATCAGGAGAGCTCTTTTAGAAGCTGATGTAAGTCTTCCTGTTGTAAGAAGGTTTGTGCAATCTGTTACTGATCAGGCTGTGGGTGTTGGAGTCATTAGAGGCGTCAAACCTGATCAGCAATTGGTTAAGATTGTTCACGAAGAACTTGTAAATCTAATGGGTGGAGATGTCTCTGAATTGGCTTTTGCCAAAACTGGGCCCACTGTCATTTTGTTGGCTGGACTCCAGGGAGTTGGGAAGACAACTGTGTGTGCAAAGTTAGCAAATTATCTCAAGAAACAGGTGTATTTCCAGTCTCCTTCCACATGCTTTATCACCCGACCTGCTGCTATTGACCAGCTTGCTATTTTGGGTAAACAGGTGGATGTGCCTGTCTATACAGCTGGTACGGATGTTAAACCTTCTGAAATTGCTAAACAAGGTTTTGAAGAGGCCAAAAAGAAGAAAATTGATGTGGTTATTGTTGACACTGCTGGTAGGCTGCAGATAGACAAAGGAATGATGGACGAGTTAAAAGAAGTGAAGCGTGTATTGAATCCAATAGAAGTCTTGTTAGTTGTGGATGCTATGACAGGGCAAGAAGCAGCAGCTTTGGTGACTACATTCAATCTTGAGATTGGAATAACTGGTGCCATATTGACAAAGCTAGATGGTGATTCAAGAGGTGGAGCGGCTTTGAGTGTCAAAGAGGTATCTGGAAAGCCAATTAAGTTGGTAGGTCGGGGGGAACGTATGGAAGATCTTGAACCTTTTTACCCCGATCGAATGGCAGGACGCATACTAGGAATGGGAGATGTTCTCTCATTTGTGGAGAAGGCACAAGAAGTTATGCGTCAAGAAGATGCTGAAGATCTGCAAAAGAAGATCATGAGTGCAAAGTTTGACTTTAATGATTTTCTAAAGCAAACCCGTACTGTTGCACAAATGGGTTCTGTGTCTCGAGTCATTGGCATGATTCCTGGTATGGCAAAGGTTACTCCTGCTCAAATTCGAGAAGCAGAAAAGAATTTGAAGAATATGGAAGTGATGATAGAAGCAATGACCCCTGAGGAAAGGGAAAAGCCAGAGCTGTTGGCAGAATCACCTGTCAGGAGGAAAAGAGTTGCTCAGCAGTCGGGGAAAACAGAGCAGCAGGTAAGCCAACTTGTAGCTCAACTATTTCAAATGCGTGTTCGGATGAAGAACCTAATGGGTGTAATGGAAGGTGGATCAATGCCAACACTTAGTAATCTTGAAGAAGCACTTAAAACAGAGGAAAAGGTTCCACCTGGCACTGCAAGGAGGAGAAAGAGAGCGCAGTCAAGGAGCCTATTTGCTGACTCGACATCAAGGCCAACTCCTCGTGGATTTGGGAGCAAAAACTGA 1665 0.439 MEAVLASCHLSTPFSSHNRTTFSSSNSINFCSSLSFRNSFAKDIWGLVQSKSVCVRRTMRPVFVRAEMFGQLTTGLESAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAVGVGVIRGVKPDQQLVKIVHEELVNLMGGDVSELAFAKTGPTVILLAGLQGVGKTTVCAKLANYLKKQVYFQSPSTCFITRPAAIDQLAILGKQVDVPVYTAGTDVKPSEIAKQGFEEAKKKKIDVVIVDTAGRLQIDKGMMDELKEVKRVLNPIEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMRQEDAEDLQKKIMSAKFDFNDFLKQTRTVAQMGSVSRVIGMIPGMAKVTPAQIREAEKNLKNMEVMIEAMTPEEREKPELLAESPVRRKRVAQQSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSMPTLSNLEEALKTEEKVPPGTARRRKRAQSRSLFADSTSRPTPRGFGSKN 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02619 554 SMART AAA_5 166 313 IPR003593 -
Car03g02619 554 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 45 553 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Car03g02619 554 Gene3D - 71 372 IPR042101 -
Car03g02619 554 Hamap Signal recognition particle 54 kDa protein [srp54]. 72 509 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Car03g02619 554 SUPERFAMILY Signal peptide-binding domain 393 494 IPR036891 GO:0006614|GO:0008312|GO:0048500
Car03g02619 554 MobiDBLite consensus disorder prediction 452 475 - -
Car03g02619 554 TIGRFAM ffh: signal recognition particle protein 70 494 IPR004780 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Car03g02619 554 MobiDBLite consensus disorder prediction 536 554 - -
Car03g02619 554 Pfam SRP54-type protein, GTPase domain 167 362 IPR000897 GO:0005525|GO:0006614
Car03g02619 554 SMART SRP54_N_2 68 153 IPR013822 GO:0005525|GO:0006614
Car03g02619 554 Gene3D - 157 351 IPR027417 -
Car03g02619 554 MobiDBLite consensus disorder prediction 516 554 - -
Car03g02619 554 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 335 348 IPR000897 GO:0005525|GO:0006614
Car03g02619 554 Pfam SRP54-type protein, helical bundle domain 72 149 IPR013822 GO:0005525|GO:0006614
Car03g02619 554 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 420 IPR027417 -
Car03g02619 554 SMART SRP54_3 167 362 IPR000897 GO:0005525|GO:0006614
Car03g02619 554 PANTHER BNAC02G02820D PROTEIN 45 553 - -
Car03g02619 554 CDD SRP_G 168 360 - -
Car03g02619 554 Gene3D - 373 497 IPR036891 GO:0006614|GO:0008312|GO:0048500
Car03g02619 554 MobiDBLite consensus disorder prediction 452 471 - -
Car03g02619 554 Pfam Signal peptide binding domain 393 491 IPR004125 GO:0006614|GO:0008312|GO:0048500
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02619 Car-Chr3 72023794 72029966 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02619 K03106 - gmx:100782581 876.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02619 03 72023794 72029966 Car03g02619 03 72023794 72029966 ECH