Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02571 ATGTTTTTGAGAAGGCGCTCCGCActtcatctccgtcttcatcttcttcttcCCAATTCATATTTCAACAATTCCTTCACCTTATTCTCTTCTCAATCACTCACATTTTCCCAACACCAACAACAATGGCTTCAAAACGTTCAAAAACTTCAATCATTACTACACCAACGTCGCACAAAAACCGCTCAAAGGTACCTCAAATTCCTTCTTCCCTCTCAACTTCACCCTCTCGTCTCCAAACCCATCTTTTTACAAACACTCTTACCCTTTTGCTCTAACCCCAACACTCTCAACCAAGTCATGGATATTTACCATTCGATGAAAAAAGACGGATTTACCCATCCCATGGTTTTCCTTAACCCTATTCTTCAAACCCTTGTTGATTCACAACAGTTCGAAGAAGCTCTCACTCTTTTCACCGAACTTGTTGAATCGGGTATTCGACCGGATGTTTTCTCTTACGCAAAAGTTGTTCGTGCTGCTGTTATGTTGAAGGATTTGAATAAGTGTTTTGAGTTGTTGAATTCGATGGAGAAAGATGGGATTCGACCTTTTGTTTATGTGTATAACTTGGTATTGGGTgggttgtgtaaagtgaaaaaaataaaagatgctcggaagttgtttgatgaaatgattcatagaaaagtggttcctaatacggtgacttataatacgcttattgatggGTATTGTAAGGTGGGTGAAATTGAGGAAGCTTTTAGCTTGAAGGCGAGGATGAAGGCTCCGTATTCGGAACCGAATTGTGTTACTTATAATTGTTTGTTAGGTGGTCTTTGTGGTTTGGGGAGATTGGAAGATGCTAGAAGGGTGCTGCAAGAGATGGAGGGGAATGGTTTTTTGCCTGGTGGGTTTTCGAGTATTATATTTGATGATCATTTGGTGTGTGCAAATAAAAATGGTTTAATAGATGGAAATGGAACAAGGGTTGATGAGCGTACTTATAGTGTTTTGTTGAATGGACTTTGCAGGGTAGGAAGGGTTGAAAAGGCTAAAGAGGTTTTAAGAAAGCTGGAAAATAATGGGGTTATTCCAAGTCAGATATCATATAACATATTGGTGAATGGTTATTGCCATGAGGATGACTTGAATAAAGCTTTATTGACAGCTGAAGAAATGGAACAACGGGGGTTGAAGCCTAGTTATATCACCTTCAATACCTTGATTAATAAATTTTGTGAAACTGGGGAGTTGGAACAGGCGGAGAAGTGGATTAGAAAGATGATAGAGAAGGGTATTTCTCCCACTTTGGAGACTTATAACTCTTTGATTCATGGTTATGGAATGGTGTGTGATTTTGTCAGGTGTTTCGAGATTTTTGAGGAAATGGAAAAGAAGGGGATAATGCCTAATGTCATAAGCTATGGTTCTCTGATAAATTGTCTCTGCAAAGATCGTAAGCTTCTTGACGCTGAGATTGTGCTTGCGGATATGGTAGGTCGTGGGGTTTCTCCAAGCGCGGAAATTTATAATATGCTCATTGAAGCTAGTTGCTCATTGAGTAAATTGAAAGATGCCTTCAGGTTTTTTGATGAAATGATAAAAAATGGAATTGATGCGACTGTTGTGACATACAATACTCTGATAAATGGACTCGGAAAAAATGAAAGAGTAACAGAGGCTGAGAATTTGTTTCTCCAAATGACCAGCAAGGGATATAACCCAAATGTGATTACATACAATTCCTTAATCTCAGGATATGCAATGTCAGGAAACACCAAGAAATGCCTCGAATGGTACGATAATCTGAAGAAACGAGGCTTAAAACCTTCAATTGGGACTTTTCATCCTTTGATCAATTCATGCAGAAAGGAAGGTGTAGTGACAATGGAGAAAATGTTTCAAGAAATGTTAGGAATGAATTTGGTTCCAGATCGAGCTGTATATAATGAAATGATATATGGTTATGCGGAAGATGGAAATGTTTTGAAGGCAATGTCTTTACACCAACAGATGGTTGATCAGGGAGTTGATTGTGACAAGGTGACTTACAACTGCTTGATTCTAGCACACCTTAGAGATAGAAGGGTCTCAGAAATAAAGCATATTTTTGATGATATGAAGGCAAAGGGTCTAGTTCCAAAAACTGATACATATAAAATTCTGGTTAAGGGACATTGTGACTTAAAAGATTTTGATGGTGCCTACATATGGTATAGGGAAATGGTTGGCGTGGGTTTGATTCTAAATGATCGCATCTGCTATCAGCTGATATCCGGGCTTAGAGAAGAAGGAATGCTGCAAGAAGCCCATATGGTATCCTCAGAATTGAGTAGTAGAGTTCAACAACTTGAAAGCTAA 2322 0.3661 MFLRRRSALHLRLHLLLPNSYFNNSFTLFSSQSLTFSQHQQQWLQNVQKLQSLLHQRRTKTAQRYLKFLLPSQLHPLVSKPIFLQTLLPFCSNPNTLNQVMDIYHSMKKDGFTHPMVFLNPILQTLVDSQQFEEALTLFTELVESGIRPDVFSYAKVVRAAVMLKDLNKCFELLNSMEKDGIRPFVYVYNLVLGGLCKVKKIKDARKLFDEMIHRKVVPNTVTYNTLIDGYCKVGEIEEAFSLKARMKAPYSEPNCVTYNCLLGGLCGLGRLEDARRVLQEMEGNGFLPGGFSSIIFDDHLVCANKNGLIDGNGTRVDERTYSVLLNGLCRVGRVEKAKEVLRKLENNGVIPSQISYNILVNGYCHEDDLNKALLTAEEMEQRGLKPSYITFNTLINKFCETGELEQAEKWIRKMIEKGISPTLETYNSLIHGYGMVCDFVRCFEIFEEMEKKGIMPNVISYGSLINCLCKDRKLLDAEIVLADMVGRGVSPSAEIYNMLIEASCSLSKLKDAFRFFDEMIKNGIDATVVTYNTLINGLGKNERVTEAENLFLQMTSKGYNPNVITYNSLISGYAMSGNTKKCLEWYDNLKKRGLKPSIGTFHPLINSCRKEGVVTMEKMFQEMLGMNLVPDRAVYNEMIYGYAEDGNVLKAMSLHQQMVDQGVDCDKVTYNCLILAHLRDRRVSEIKHIFDDMKAKGLVPKTDTYKILVKGHCDLKDFDGAYIWYREMVGVGLILNDRICYQLISGLREEGMLQEAHMVSSELSSRVQQLES 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02571 773 PANTHER ATPASE EXPRESSION PROTEIN 3 35 765 - -
Car03g02571 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Car03g02571 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 289 IPR002885 -
Car03g02571 773 Pfam Pentatricopeptide repeat domain 138 194 IPR002885 -
Car03g02571 773 Pfam PPR repeat 317 345 IPR002885 -
Car03g02571 773 Pfam PPR repeat 488 520 IPR002885 -
Car03g02571 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Car03g02571 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
Car03g02571 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
Car03g02571 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 115 149 IPR002885 -
Car03g02571 773 Gene3D Tetratricopeptide repeat domain 617 773 IPR011990 GO:0005515
Car03g02571 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Car03g02571 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 150 184 IPR002885 -
Car03g02571 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Car03g02571 773 TIGRFAM PPR: pentatricopeptide repeat domain 321 353 IPR002885 -
Car03g02571 773 TIGRFAM PPR: pentatricopeptide repeat domain 390 423 IPR002885 -
Car03g02571 773 TIGRFAM PPR: pentatricopeptide repeat domain 187 221 IPR002885 -
Car03g02571 773 TIGRFAM PPR: pentatricopeptide repeat domain 565 598 IPR002885 -
Car03g02571 773 TIGRFAM PPR: pentatricopeptide repeat domain 222 248 IPR002885 -
Car03g02571 773 TIGRFAM PPR: pentatricopeptide repeat domain 460 493 IPR002885 -
Car03g02571 773 TIGRFAM PPR: pentatricopeptide repeat domain 153 184 IPR002885 -
Car03g02571 773 TIGRFAM PPR: pentatricopeptide repeat domain 426 459 IPR002885 -
Car03g02571 773 TIGRFAM PPR: pentatricopeptide repeat domain 530 564 IPR002885 -
Car03g02571 773 TIGRFAM PPR: pentatricopeptide repeat domain 257 289 IPR002885 -
Car03g02571 773 TIGRFAM PPR: pentatricopeptide repeat domain 635 667 IPR002885 -
Car03g02571 773 TIGRFAM PPR: pentatricopeptide repeat domain 669 701 IPR002885 -
Car03g02571 773 TIGRFAM PPR: pentatricopeptide repeat domain 120 151 IPR002885 -
Car03g02571 773 TIGRFAM PPR: pentatricopeptide repeat domain 355 388 IPR002885 -
Car03g02571 773 TIGRFAM PPR: pentatricopeptide repeat domain 496 526 IPR002885 -
Car03g02571 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 458 492 IPR002885 -
Car03g02571 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 563 597 IPR002885 -
Car03g02571 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
Car03g02571 773 Gene3D Tetratricopeptide repeat domain 201 305 IPR011990 GO:0005515
Car03g02571 773 Gene3D Tetratricopeptide repeat domain 408 510 IPR011990 GO:0005515
Car03g02571 773 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 35 765 - -
Car03g02571 773 SUPERFAMILY HCP-like 328 596 - -
Car03g02571 773 Pfam PPR repeat family 352 400 IPR002885 -
Car03g02571 773 Pfam PPR repeat family 426 471 IPR002885 -
Car03g02571 773 Pfam PPR repeat family 668 714 IPR002885 -
Car03g02571 773 Pfam PPR repeat family 528 575 IPR002885 -
Car03g02571 773 Pfam PPR repeat family 219 267 IPR002885 -
Car03g02571 773 Pfam PPR repeat 635 664 IPR002885 -
Car03g02571 773 Gene3D Tetratricopeptide repeat domain 511 616 IPR011990 GO:0005515
Car03g02571 773 Gene3D Tetratricopeptide repeat domain 41 200 IPR011990 GO:0005515
Car03g02571 773 Gene3D Tetratricopeptide repeat domain 307 407 IPR011990 GO:0005515
Car03g02571 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 632 666 IPR002885 -
Car03g02571 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 667 701 IPR002885 -
Car03g02571 773 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02571 318 767 Glycosyltransferase AT1G05670 25.358 2.98e-53 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02571 - - gmx:100786292 1040.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02571 03 71556619 71559637 Car03g02571 03 71556619 71559637 ECH