Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02557 ATGGAGGCACTCCTCCAATTCCAACCCAGTTATTTCTCCTTCTCCTCTTTCCTTCACCACTTGAGCTTGAAACCAAATAAAACACATCCCCGTTCTCCCCTTTTCAATTTTCCCATCAACAACTCAAAAACCCACTATTCCCTTCACATACACACACCCCCTCCACTTCCAATTTCACACCCCCCTTTCCCAAATCCctctcttctctccttcttcctccgtctatcttctcGCCACAACGACATCAACCTCGCCAAAGCCATCCACGCAACCCTCCTCAAACGCAATGATGAAATTCAAAACACTCATCTCTCCACCGCCCTCATTTCAACCTATATCAATCTCCGTCTCTTATCCTACGCACACCATCTCTTCCTTTCCCTTTCTTCCCCCACCGTCGTTTCTTACTCCGCTCTCATTTCCGCCTTCTCCAAATCCAATCGCGAACACCAAGCTTTGTTCCTCTTCCTTCACATGATAACCACTTCATCTCTTCAACCAAATGACTACACTTATGTTGCCGTTTTAACCGCCTGCACCCGAATCCTCTATTTCCAATTCGGCCTCCAACTACACGCTAGGGTTATCAAAACCGGACATTTTAACAATTCCGTTTTTATCTCCAATGCGCTTGTGTCTTTTTATACTAAATGCGGGTTTTATCAATCTGCATTCAAGGTGTTCGATGAAATGCGTCAAAGAGATATTGCGTCTTGGAACACCGTCATGTGTTGTGCGGTTCAGGAGTTTATGTACGACACCGCGTTTCGATTGTTTTGTGATATGCAAGTAATTGATGGATTAAAAGTTGATTATTTTACTTTGTCAACGCTTTTGACTGCGTGTGGTGCAAGTGCTTTGGTGGTGGAAGGGAAGCAAGTGCATGCGCATGCTGTTAAGGTTGGGTTGGATGCTGAATTGAATGTTGGAAATGCACTTATTGGATTTTATAAGAATTGTGGAAATGTTGATGATGTGATATGTTTGTTTGAGAGGATGAGTGTGAGAGATGTTATTACTTGGACGGAAATGATGAGGGTGTATATGGGTTTTGGGTCGGTGGATTTGGCTTTGAAGATGTTTAATGAAATGCCGGTGAAGAATTCTGTGACTTATAATGCTCTTTTGTCTGGGTTTTGTCGAAATGGTGAGGGTTTAAAGGCTGTGGAATTGTTTATCAAAATGGTGGATGAGGGCATGGAGTTAACGGATTTCTCTTTGAGTAGTGGGATTAATGCTTGTAGTTTGCTTGGGGATTACGGGGTCAGCAAGCAGATGCATGGATTTGCAATCAAGTTTGGGTTTGGTTCAAATGTTTGTGTTGAAGGGGCTTTGCTTGACATGTACACAAAATGTGGGAGGATGGTAGAGGCTAAGAAGATGTTCAGCCGGTGGGAGGAATCGGAGGAAGTTAGCTCTGTGGCTTGGACTTCCATGATGTGTGGCTATGCTCGGAACGGGCAACCGGAGGAGGCGATTTCTCTTTTCCACCTTGGTCATACCGAAGGGAAAATGATTATGGATGAAGTTGCATCAACTTCAATGATTGGTCTTTGTGGAACTGTTGGTTATCTTGATATGGGTAAGCAAATCCATTGTCAAGTTTTTAAATTTGGCTTTCAATCTATTGTGGGAGTTGGAAATGCTGTTGTGAGTATGTATTTCAAGTGTGGGAATGCAGATGATGCAATTAAGATGTTCAGTAATATGTCCTTTACCGATACAGTTTCATGGAATACTTTGATTTCTGGTTATCTTATGCATAAACAGGGCAATAGAGCATTGGAAGTATGGTTGGAAATGCAGGAGAAGGGCATAAAGCCTGATGAAGTTACATTTGTTTTGATAATTTTAGCCTATAGGCATACTAACTTGAATTTGGTTGATGACTGTTGTAGTTTGTTTAACTCAATGAAAACGGTTTATCACGTTGAGCCAACATTTGAGCATTATTCCTCTTTCGTCCGTGTTTTGGTTCACTGGGGTCTTCTAGAAGAAGCAGTGGAAACCATCAATAAGATGCCTTTTAAGCCTTCTGCCCTTGTTTGGCGTGCTTTGCTTGATGGTTGTAGACTCCATAAGAATACAATAATTGAAAAATGGGCTGCCAAGAATATTCTTGCCCTAGATCCTAAAGATCCATCCACTTTTATACTTGTTTCGAATTTGTATTCATCTTCTGGGAGATGGGACTGCTCTGAGATGGTTAGGGAAAGTATGAGAGAAAAGGGATTTCGTAAACACCCGGCTCAAAGTTGGATCATTTCTCAGAAGAAAATGCATTCGTTCTATGCAAGAGATAAATCTCATCCACAAGAGAAAGACATATATAGTGGGTTGGAGATTCTAATATTGGAGTGCCTAAAAGTAGGATATGAACCTGACACTAGTTTTGTTCTCCATGAAGTGGAAGAGCATCACAAGAAAAATTTTCTATTCCATCACAGTTCCAAACTAGCAGCAACTTATGGAATATTGATGACAAAGCCAGGAAAGCCCATTCGGATTGTAAAGAACATTCTTCTTTGTGGGGACTGTCATACATTCTTAAAATATGTATCTATTGTCACTAAGAGAGATATTTTTCTAAGGGATTCTTCAGGATTTCACTGTTTTTCTAATGGCCAGTGCTCGTGTAAAGATCATTGGTGA 2652 0.4065 MEALLQFQPSYFSFSSFLHHLSLKPNKTHPRSPLFNFPINNSKTHYSLHIHTPPPLPISHPPFPNPSLLSFFLRLSSRHNDINLAKAIHATLLKRNDEIQNTHLSTALISTYINLRLLSYAHHLFLSLSSPTVVSYSALISAFSKSNREHQALFLFLHMITTSSLQPNDYTYVAVLTACTRILYFQFGLQLHARVIKTGHFNNSVFISNALVSFYTKCGFYQSAFKVFDEMRQRDIASWNTVMCCAVQEFMYDTAFRLFCDMQVIDGLKVDYFTLSTLLTACGASALVVEGKQVHAHAVKVGLDAELNVGNALIGFYKNCGNVDDVICLFERMSVRDVITWTEMMRVYMGFGSVDLALKMFNEMPVKNSVTYNALLSGFCRNGEGLKAVELFIKMVDEGMELTDFSLSSGINACSLLGDYGVSKQMHGFAIKFGFGSNVCVEGALLDMYTKCGRMVEAKKMFSRWEESEEVSSVAWTSMMCGYARNGQPEEAISLFHLGHTEGKMIMDEVASTSMIGLCGTVGYLDMGKQIHCQVFKFGFQSIVGVGNAVVSMYFKCGNADDAIKMFSNMSFTDTVSWNTLISGYLMHKQGNRALEVWLEMQEKGIKPDEVTFVLIILAYRHTNLNLVDDCCSLFNSMKTVYHVEPTFEHYSSFVRVLVHWGLLEEAVETINKMPFKPSALVWRALLDGCRLHKNTIIEKWAAKNILALDPKDPSTFILVSNLYSSSGRWDCSEMVRESMREKGFRKHPAQSWIISQKKMHSFYARDKSHPQEKDIYSGLEILILECLKVGYEPDTSFVLHEVEEHHKKNFLFHHSSKLAATYGILMTKPGKPIRIVKNILLCGDCHTFLKYVSIVTKRDIFLRDSSGFHCFSNGQCSCKDHW 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02557 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Car03g02557 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 506 IPR002885 -
Car03g02557 883 Pfam PPR repeat family 235 282 IPR002885 -
Car03g02557 883 Pfam PPR repeat family 574 617 IPR002885 -
Car03g02557 883 Pfam PPR repeat family 131 179 IPR002885 -
Car03g02557 883 Pfam PPR repeat family 367 414 IPR002885 -
Car03g02557 883 PANTHER OS07G0172600 PROTEIN 481 869 - -
Car03g02557 883 PANTHER OS07G0172600 PROTEIN 56 414 - -
Car03g02557 883 PANTHER OS07G0172600 PROTEIN 405 494 - -
Car03g02557 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 367 IPR002885 -
Car03g02557 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Car03g02557 883 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 405 494 - -
Car03g02557 883 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 56 414 - -
Car03g02557 883 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 481 869 - -
Car03g02557 883 Pfam E motif 694 754 IPR046848 -
Car03g02557 883 Gene3D Tetratricopeptide repeat domain 411 503 IPR011990 GO:0005515
Car03g02557 883 Gene3D Tetratricopeptide repeat domain 625 776 IPR011990 GO:0005515
Car03g02557 883 Gene3D Tetratricopeptide repeat domain 504 624 IPR011990 GO:0005515
Car03g02557 883 Pfam PPR repeat 474 497 IPR002885 -
Car03g02557 883 Pfam PPR repeat 548 570 IPR002885 -
Car03g02557 883 Pfam PPR repeat 444 467 IPR002885 -
Car03g02557 883 Pfam PPR repeat 650 674 IPR002885 -
Car03g02557 883 Pfam PPR repeat 311 336 IPR002885 -
Car03g02557 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 132 167 IPR002885 -
Car03g02557 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 713 747 IPR002885 -
Car03g02557 883 Pfam DYW family of nucleic acid deaminases 791 883 IPR032867 GO:0008270
Car03g02557 883 Gene3D Tetratricopeptide repeat domain 302 395 IPR011990 GO:0005515
Car03g02557 883 Gene3D Tetratricopeptide repeat domain 65 184 IPR011990 GO:0005515
Car03g02557 883 Gene3D Tetratricopeptide repeat domain 185 300 IPR011990 GO:0005515
Car03g02557 883 TIGRFAM PPR: pentatricopeptide repeat domain 474 497 IPR002885 -
Car03g02557 883 TIGRFAM PPR: pentatricopeptide repeat domain 576 610 IPR002885 -
Car03g02557 883 TIGRFAM PPR: pentatricopeptide repeat domain 370 403 IPR002885 -
Car03g02557 883 TIGRFAM PPR: pentatricopeptide repeat domain 238 263 IPR002885 -
Car03g02557 883 TIGRFAM PPR: pentatricopeptide repeat domain 209 236 IPR002885 -
Car03g02557 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 574 608 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02557 Car-Chr3 71442313 71445394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02557 69 883 Glycoside Hydrolase AT3G49170 34.788 6.77e-158 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02557 - - mtr:MTR_7g103230 1337.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02557 03 71442313 71445394 Car03g02557 03 71442313 71445394 ECH