Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02556 ATGGATGCACATCGTAAACACCAGGTATCATTGAGAGGAGCGAGTGCGAAGGAGATAACGCGTGATGATCTTCTTCAGAAGGTCTCACGGGAAAGAGAGCTTCGTAATTATGCAAAACGTGCTGCTTCTGCTGCTCTCTTCATTCAGAGAGTATGGAGGCGCTTCAAGGTTACAAAGATGGTTGCTCTGCAGCTTCAACAGGAGTGGGAGACATCAGTGAACCGTTATACTGGGGTGATGACTGCAATTTGGATTTCAAACAATTTGTTGAGGCCATTTTTGTTCTTTATAACCCGTTTCTCAAATCGGTATCAGAAGGTCCATAGCAAGAAAATAGATTCTATGAGGATGTGCTTTACAATCTTATTGGAAAGCTTGAAATCTCCTGATTTAAAGCGGAACTTTTGCTTTTTAGCAATTGGTACAACTGAAGAGAGAAGAATTTGGAGTTACCAGGCACAGCATCTTACTTCTCTTGGTTTTTTTATTCTTTCAGAGTACAGTGAATACAATTCAGGGGCTCAAGATATTACTATCGTTACATCTCTAGCAATGCGTATTCTTGTAATTTTAACTGATCTAAAAGGATGGAAAGGCATTACAGATGACAACCGCTTAGATGCAGATTTATCTGTGAAAGGTTTAGTTGAGTTCACAGGGAGTAACAAAAGTAGTAGTTATGTTTCTATTGCTAGATATATTAGTGCGTTGGATAATTATTCTTCCCAGACAAAAGTTATCACCCATGAAAGTGATAAATTTTTTATCACTGCAAGTGCAATAACTTTAGCTGTGCGACCATTTTATCTGAATTTTTTTGATGGAGAAAGGCCTGATATACTGGATGTCAACCATGCTGCTAAGCAATATATTGTACATCTAATGACTATTCCCTGGCTCGTGCAACTTCTCCCACCCGTTCTTCTACCTGCTTTAAAGCACAAGTCTATTTTGTTCCCATGTTTTCAGACACTATTGATTTTGAAAGAGAATGTTTTAATGGAGATGTCAGAGTTGGCTAAGTCAGAAGTTATTGTCTCTTTCAAGGAAATTCCACCAGTTGGTTGGTCTCTCGCTAACTTTATATGCCTAGCAACAGGGAATGAAAATGACTCTGTAGACTCCAGATCCTTCAATCAAGGTTTAGACTGGGCGTTGTATGTCCATGTTATTATCACTCTAGCAGAAAGTCTACTGGCTTATCTTTATAATATTGAATGGCTAAAAAAGAAGAAGAAATCTTTTCAAACTGATGTTGAAAGTTTAATACAGCCGGGGGATATGGTTCTGCATGAGGGTGAAGCAACCCATGAATCGTTAATAATGTCATACATGGATCAATTTAGGCCTGTTTGTCAGCAGTGGCATCTCACAAATCTTTTGGCATCAGTGAATAGTGATGCCATTAAGAAGGCTGAGACTTCTATCTCAAACAGTGTGGTACAGTTGGCGAAGATAGATCTTGGTGATGTTGCACTTTTTTATTCTAACTTCCTTAGAATATTTTCAGCCTTGAGTCCAATTCGTGGCTCATTACCAGTTCTTAACATGCTATCATTTACTCCCGGATTTCTTGTGAGATTGTGGGGTGTACTGGAGGATTCCTTTTTCTCTGCAGACAAACATATTTCTGATAATCACACAAGTGAAAATGCAAAACATAAAGATTTTGAGAAGATTCCAAAACAGGCAAGTAAAGATGGAGGCAGTAAGTGGGTCAGCGCCCTTCATAAATTTACAGGTAAATCACAAACTGCAACAAACTGCACAGATGCCATTGGCAGTCACGCTGCAACTAGCAAAGTGAATTTAGATTCATCAGATGTATGGGACATTGAACCTATGAGGCATGGCCCACAAGGCATTCCAAAGAATATGTTTGCTATGCTTCATCTTTTCTGTGCGACCTATTCTCATCTGCTTTTAGTTCTTGATGACATAGAGTTTTATGAGAAACAGGTTCCATTCAAGTTAGAGCAGCAACGAAGAATTGCATCAATGCTCAATACCCTGGTCTATAATGGCTTGTCCCATGTTAATGGTCATCACAGCAGGGCCCTCATGGATTGTGCTGTCAGATGCTTACATTTAATGTATGAAAGGGATTGCAGACACCCATTTTGTCCTCCTGACTTGTGGCTTTCTCCTGCCAGAAAAAGCCGGCCACCAATTGCAGTTGCTGCTAGAACTCATGAAATTTTTTCGGCCAACCTGAGATCTGATGATTCATTAACTTCCCTGAGTGTAGGCTCTGTTATCACCATAACTCCTCACGTTTTCCCGTTTGAAGAGAGAGTTGAGATGTTTCGTGAATTCATCAAGATGGATAAAGCCTCACGCAAAATGGCTGGTGAAATTTCTGAACCCGGTTCACGAGCCATTGAGATAGTAGTACGCCGGGGTCATATCGTTGAAGATGGATTTCGACAATTAAATTCACTTGGTTCAAAGTTGAAGTCGTCCATCCATGTATCGTTTGTCAGTGAATGTGGCCTTACGGAGGCTGGTCTGGATTATGGTGGATTATCTAAAGAGTTTTTGACTGACATGTCAAAAGAAGCATTTGCCCCAGAATACGGGCTTTTTACCCAAACCTCAACTTCAGACAGGCTCCTAATTCCAACTCCATCCGCAAGATTTCTGGACAATGGTCTTCAAATGATTGAGTTCCTTGGAAGAGTAGTTGGTAAATCTTTTTATGAAGGAATATTACTTGATTACTCTTTCTCGCATGTTTTTGTTCAAAAGCTATTGGGACGATATAGCTTTCTTGATGAATTATCAACACTTGATCCGGAGCTATACAGGAATCTCATGTATGTCAAGAGTTATGATGGTGATGTCAAGGAGCTCTCTCTTGATTTCACAGTTACTGAAGAATCATTTGGCAAAAGGCATGTGATTGAGCTCAAGTCTGGTGGCAAAGATATTTCTGTGACAAACGAGAACAAGATGCAGTACATACATGCAATGGCAGACTACAAACTCAACCAACAGATATTGCCCTTTTCAAATGCATTTTATCGAGGGCTAACCGATCTTATATCTCCATCCTGGTTGAAATTATTTAATGCTAGTGAATTTAATCAGTTGCTTTCAGGTGGCAATTACGATATTGACATTGATGATTTTAAAAATAACACACGATACACTGGTGGTTACAATGAGGGGAGCCGGACAATCAAAATCTTCTGGGAGGTGATTAAAGGCTTTGAACCGAAAGAGCGTTGTATGGTTCTTAAATTTGTCACAAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATACTTACAGCCACCTTTTACCATCCACAAGGTTGCATGTGATGTCCCTCTTTGGGCGACAATTGGAGGACAAGATGTTGAGCGGCTTCCATCAGCTTCAACCTGCTACAATACTCTTAAGCTTCCAACATACAAACGTCCAAGCACTTTGCGAGCAAAGCTTCTATATGCTATAAGTTCAAATGCCGGATTTGAACTTTCCTGA 3489 0.4001 MDAHRKHQVSLRGASAKEITRDDLLQKVSRERELRNYAKRAASAALFIQRVWRRFKVTKMVALQLQQEWETSVNRYTGVMTAIWISNNLLRPFLFFITRFSNRYQKVHSKKIDSMRMCFTILLESLKSPDLKRNFCFLAIGTTEERRIWSYQAQHLTSLGFFILSEYSEYNSGAQDITIVTSLAMRILVILTDLKGWKGITDDNRLDADLSVKGLVEFTGSNKSSSYVSIARYISALDNYSSQTKVITHESDKFFITASAITLAVRPFYLNFFDGERPDILDVNHAAKQYIVHLMTIPWLVQLLPPVLLPALKHKSILFPCFQTLLILKENVLMEMSELAKSEVIVSFKEIPPVGWSLANFICLATGNENDSVDSRSFNQGLDWALYVHVIITLAESLLAYLYNIEWLKKKKKSFQTDVESLIQPGDMVLHEGEATHESLIMSYMDQFRPVCQQWHLTNLLASVNSDAIKKAETSISNSVVQLAKIDLGDVALFYSNFLRIFSALSPIRGSLPVLNMLSFTPGFLVRLWGVLEDSFFSADKHISDNHTSENAKHKDFEKIPKQASKDGGSKWVSALHKFTGKSQTATNCTDAIGSHAATSKVNLDSSDVWDIEPMRHGPQGIPKNMFAMLHLFCATYSHLLLVLDDIEFYEKQVPFKLEQQRRIASMLNTLVYNGLSHVNGHHSRALMDCAVRCLHLMYERDCRHPFCPPDLWLSPARKSRPPIAVAARTHEIFSANLRSDDSLTSLSVGSVITITPHVFPFEERVEMFREFIKMDKASRKMAGEISEPGSRAIEIVVRRGHIVEDGFRQLNSLGSKLKSSIHVSFVSECGLTEAGLDYGGLSKEFLTDMSKEAFAPEYGLFTQTSTSDRLLIPTPSARFLDNGLQMIEFLGRVVGKSFYEGILLDYSFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKSYDGDVKELSLDFTVTEESFGKRHVIELKSGGKDISVTNENKMQYIHAMADYKLNQQILPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGNYDIDIDDFKNNTRYTGGYNEGSRTIKIFWEVIKGFEPKERCMVLKFVTSCSRAPLLGFKYLQPPFTIHKVACDVPLWATIGGQDVERLPSASTCYNTLKLPTYKRPSTLRAKLLYAISSNAGFELS 1162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02556 1162 ProSiteProfiles HECT domain profile. 818 1162 IPR000569 GO:0004842
Car03g02556 1162 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 3 1162 IPR044611 GO:0000209|GO:0061630
Car03g02556 1162 SUPERFAMILY Hect, E3 ligase catalytic domain 794 1155 IPR035983 GO:0004842
Car03g02556 1162 Gene3D Hect, E3 ligase catalytic domain 920 999 - -
Car03g02556 1162 Pfam HECT-domain (ubiquitin-transferase) 849 1162 IPR000569 GO:0004842
Car03g02556 1162 Gene3D Hect, E3 ligase catalytic domain 1037 1161 - -
Car03g02556 1162 CDD HECTc 794 1160 IPR000569 GO:0004842
Car03g02556 1162 SMART hect_3 812 1162 IPR000569 GO:0004842
Car03g02556 1162 Gene3D Hect, E3 ligase catalytic domains 796 1034 - -
Car03g02556 1162 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 3 1162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02556 Car-Chr3 71428045 71437409 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02556 K10588 - gmx:100527169 1962.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02556 03 71428045 71437409 Car03g02556 03 71428045 71437409 ECH