Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02549 ATGAAACTCTTGGAAAAAGATTTTGCTCCTAACCAAAGAGGAACTGTTAAAATAATTGCAGAAGAACCTGATGATGTATGGCTTCTTTACAATCTCATTACCATCGGCGACGTCGTTACCGCCGAAACCACACGCAAAGTCCACCTCGAATCAACCAAAAACACCTCGTCACGTGTCAAACTCGCCCTTCATCTCAAAGTCACGTGCCGCGACTTTCAAAAAGACTCTTCCACCCTCCGCGTACATGGCCGCAATCTCGAACCAAATCAACATGTTGCTGCCGGTTCTTTCCACACTTTAACCCTTGAAAGAAATAAACCTTTTCACCTTGAAAAGAAAAAGTGGAGTCCACAAGCTGTTGAAACCTTAGCCGAGGTTACCGATGATTCATCATTTTCTTCTTCTGATGCCAATCTTCTTGTTGTTGTTCTTCAACAACACCAAGCAGAAATTCACTTGCTTGGAAAACAAGTCACTACTCGTTGTTCCAAAATCGAAGCCTCTTCCTCTTCACATTCTCATAAAAAATCATCTTCTTCCTCTTCAAACATGTTTTTTCGTGAGGTTTTTGTTGCTTTCATGAAGCACGTGGATTTCAACATTGTGAAATGTGTGGTGATAGCAGGGGATAGCGACAGTAATACATCGATATCCCCTACTATCTTTCGTAGATTTCTTTTGTCAGAAGCGAAGAGGTTAAAGATAAAATGTATCGAAGAGAATAAATCACGTATTGTTGTGGTAGGGTCAAGATGCAACAACGACAAAGGTAATTGTGACTTTGACTTGAAGGAAGTTTTAAGTGATGTGACCGTGATGAAATTGATAAAGAACAACGAGTTAGGGTTAGAAATTAGGACATTTAAGGAGTTGTGGGATATGATATGCAACAATTCGGATCGTGTGTGTTATGGAGCAAGGCATGTGGAGAGTGCACATGAGATGAATGCGATTGAAACACTTTTGATAAGTGATGATCTTTATAGGAATGAAGACACTGAAATGAGGAAAAAATATGTGAGTTTGGTGAAATCGGTGAAAGAGAGTGGAGGAAAGGCTTTGGTGTATTCTTCTATGCATGTTTCGGCACCACAATTAGCTCAGCTAACTGGTGTTGCTGCCATTCTTAGGTTTCCATTGCCTAGTCTTCAAGATATGGATGAGGATGATGATCATGCATGGATATaa 1188 0.4032 MKLLEKDFAPNQRGTVKIIAEEPDDVWLLYNLITIGDVVTAETTRKVHLESTKNTSSRVKLALHLKVTCRDFQKDSSTLRVHGRNLEPNQHVAAGSFHTLTLERNKPFHLEKKKWSPQAVETLAEVTDDSSFSSSDANLLVVVLQQHQAEIHLLGKQVTTRCSKIEASSSSHSHKKSSSSSSNMFFREVFVAFMKHVDFNIVKCVVIAGDSDSNTSISPTIFRRFLLSEAKRLKIKCIEENKSRIVVVGSRCNNDKGNCDFDLKEVLSDVTVMKLIKNNELGLEIRTFKELWDMICNNSDRVCYGARHVESAHEMNAIETLLISDDLYRNEDTEMRKKYVSLVKSVKESGGKALVYSSMHVSAPQLAQLTGVAAILRFPLPSLQDMDEDDDHAWI 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02549 395 Pfam eRF1 domain 3 285 380 IPR005142 -
Car03g02549 395 Gene3D - 280 394 IPR029064 -
Car03g02549 395 PANTHER EUKARYOTIC RELEASE FACTOR 1 (ERF1) FAMILY PROTEIN 1 387 - -
Car03g02549 395 SMART eRF1_1_2 1 128 IPR005140 -
Car03g02549 395 Gene3D eRF1 domain 2 137 276 IPR042226 -
Car03g02549 395 Gene3D Pelota, domain A 1 129 IPR038069 -
Car03g02549 395 Pfam eRF1 domain 1 1 126 IPR005140 -
Car03g02549 395 TIGRFAM pelota: mRNA surveillance protein pelota 2 380 IPR004405 GO:0070481|GO:0070966|GO:0071025
Car03g02549 395 PANTHER PELOTA 1 387 IPR004405 GO:0070481|GO:0070966|GO:0071025
Car03g02549 395 SUPERFAMILY Translational machinery components 135 278 - -
Car03g02549 395 SUPERFAMILY L30e-like 284 384 IPR029064 -
Car03g02549 395 SUPERFAMILY Dom34/Pelota N-terminal domain-like 1 127 IPR038069 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02549 Car-Chr3 71381130 71382433 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02549 K06965 - gmx:100803618 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02549 03 71381130 71382433 Car03g02549 03 71381130 71382433 ECH