Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02532 ATGGCAAATCCTTTGGGAGCACTCATGACCTCATCATTGCTCTTTCTTGTTGTTTTTGCACTTCCTAATCATGTCCATGCAGAAATTAACACCTCATGGAAACATGCAGCACCCAATAATGTTGGAGGTGCAGATAAAACTGTTCCAATACATCAACACACCCCGTTTACACCTGGCCAATGGAAGCAAGCTTATGCCACTTTCTATGAAGGAGGCTCTGGGACATTTGGAGGAGCTTGTGGATATGAGGATGTGGTTAAAGATGGTTATGGCCTAGACACAGCAGCATTGAGCACAGCATTGTTCAACCAAGGTCAAACATGTGGTGCGTGTTATGAGATCAAATGTGTGGATTCTCCTAAAGGGTGTAAGCCAGGACAACCCTCTCTTTTTGTGACAGCAACAGATCATTGTCCTCCAAATTACAACCTACCAAGTGACAATGGAGGATGGTGTAATCCACCACGTGAGCATTTTGATTTAGCCAAACCTGCATATCTCAAAATGGCTGAATATACAGCTGGAATTGTGCCAGTCCAATATCGCAGGGTACCGTGCAAGAAACAAGGAGGTATTCGGTTCACAATCACAGGGAATCCTTACTTCTATCTAATAAAAGTGTGGAATGTTGGAGGAGCTGGTGATGTTGTAGGAGTGCAAGTGAAGGGTGAAGACAAGTTGCAATGGACAGATTTGAAAAGAAATTGGGGTCAGAAATGGGAGACTAATGCAATGTTATTAGGAGAGACATTGACATTTAGGGTAAAGACAAGTGATGGAAGGTCCTCTACTTCATTGCGTGTTGTCCCCAACAAATGGCAACTTGGGCAGACTTTTGAAGGCAAAAACTTGGCATAA 858 0.4336 MANPLGALMTSSLLFLVVFALPNHVHAEINTSWKHAAPNNVGGADKTVPIHQHTPFTPGQWKQAYATFYEGGSGTFGGACGYEDVVKDGYGLDTAALSTALFNQGQTCGACYEIKCVDSPKGCKPGQPSLFVTATDHCPPNYNLPSDNGGWCNPPREHFDLAKPAYLKMAEYTAGIVPVQYRRVPCKKQGGIRFTITGNPYFYLIKVWNVGGAGDVVGVQVKGEDKLQWTDLKRNWGQKWETNAMLLGETLTFRVKTSDGRSSTSLRVVPNKWQLGQTFEGKNLA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02532 285 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 201 281 IPR007117 -
Car03g02532 285 PANTHER EXPANSIN-A15 7 284 IPR002963 GO:0009664
Car03g02532 285 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 77 191 IPR007112 -
Car03g02532 285 PANTHER EXPANSIN-A32 7 284 - -
Car03g02532 285 Gene3D - 44 187 IPR036908 -
Car03g02532 285 Pfam Expansin C-terminal domain 192 270 IPR007117 -
Car03g02532 285 SMART dpbb_1 94 181 IPR007112 -
Car03g02532 285 Pfam Lytic transglycolase 94 181 IPR009009 -
Car03g02532 285 SUPERFAMILY PHL pollen allergen 188 281 IPR036749 -
Car03g02532 285 PRINTS Expansin signature 89 103 IPR002963 GO:0009664
Car03g02532 285 PRINTS Expansin signature 116 127 IPR002963 GO:0009664
Car03g02532 285 PRINTS Expansin signature 130 140 IPR002963 GO:0009664
Car03g02532 285 PRINTS Expansin signature 149 166 IPR002963 GO:0009664
Car03g02532 285 PRINTS Expansin signature 166 179 IPR002963 GO:0009664
Car03g02532 285 PRINTS Expansin signature 190 202 IPR002963 GO:0009664
Car03g02532 285 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Car03g02532 285 PRINTS Expansin signature 238 259 IPR002963 GO:0009664
Car03g02532 285 PRINTS Expansin signature 267 283 IPR002963 GO:0009664
Car03g02532 285 PRINTS Expansin/Lol pI family signature 60 75 IPR007118 GO:0005576
Car03g02532 285 PRINTS Expansin/Lol pI family signature 98 116 IPR007118 GO:0005576
Car03g02532 285 PRINTS Expansin/Lol pI family signature 174 190 IPR007118 GO:0005576
Car03g02532 285 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Car03g02532 285 PRINTS Expansin/Lol pI family signature 267 281 IPR007118 GO:0005576
Car03g02532 285 SUPERFAMILY Barwin-like endoglucanases 60 209 IPR036908 -
Car03g02532 285 Gene3D - 190 284 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02532 Car-Chr3 71236280 71238811 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02532 56 284 Miscellaneous Gene Families AT5G02260 62.338 4.87e-110 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02532 - - gmx:100800424 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02532 03 71236280 71238811 Car03g02532 03 71236280 71238811 ECH