Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02528 atGGCGGTAACTTCAACATCACTCGCTTCTCAACTCTCCATCGGTCTCCGCCGCTCCTCTCCTAAGTTCGATTCTTTCACTTCTCAATCTCTCCCTCTTACCAACAACACTTTCTTCGATCCAAATCTTCGCTTATCTCTCTCTTCCACCAAACCCTCCCGTACCGTTATCGCCATGGCTGGCTCTGGCAAGTTCTTTGTTGGTGGCAATTGGAAGTGTAATGGAACAAAAGACTCCATCAGTAAGCTTCTCTCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTGATGTTGTTGTTGCACCTCCCTTTGTGTACATCGATCAGGTGAAAAGCTCAATTACAGATAGGATTGAAATATCTGCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACCGGAGAAATCAGTGTGGAACAACTGAAAGACCTTGGATGCAAGTGGGTTATTCTTGGACATTCTGAGCGAAGGCATGTTATTGGAGAAAAAGATGAGTTTATAGGAAAGAAAGCGGCTTATGCTTTGAGCGAGGGTCTTGGAGTGATTGCATGCATTGGGGAATTGTTAGAAGAGAGGGAAGCTGGGAAAACTTTTGATGTCTGTTTCCAGCAATTGAAGGCTTATGCAGATGCGGTGCCTAGTTGGGATAATATTGTTATTGCATATGAACCTGTATGGGCCATTGGAACTGGCAAAGTAGCCTCTCCCGAGCAAGCTCAGGAAGTACATGTGGCTCTCCGTGATTGGCTTAAGAATAATGTCTCAGCTGAAGTCGCATCTAAAACACGAATAATTTATGGAGGATCTGTAAATGGGGGCAACAGTGCTGAGCTTGCAAAGAAAGAAGACATTGATGGATTTCTTGTTGGAGGTGCTTCATTAAAGGGTCCTGAGTTTGCCACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCGGCTTGA 945 0.4476 MAVTSTSLASQLSIGLRRSSPKFDSFTSQSLPLTNNTFFDPNLRLSLSSTKPSRTVIAMAGSGKFFVGGNWKCNGTKDSISKLLSDLNSAKLEPDVDVVVAPPFVYIDQVKSSITDRIEISAQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGELLEEREAGKTFDVCFQQLKAYADAVPSWDNIVIAYEPVWAIGTGKVASPEQAQEVHVALRDWLKNNVSAEVASKTRIIYGGSVNGGNSAELAKKEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02528 314 CDD TIM 65 305 IPR000652 GO:0004807
Car03g02528 314 ProSiteProfiles Triosephosphate isomerase (TIM) family profile. 64 306 IPR000652 GO:0004807
Car03g02528 314 TIGRFAM tim: triose-phosphate isomerase 66 296 IPR000652 GO:0004807
Car03g02528 314 Pfam Triosephosphate isomerase 66 306 IPR000652 GO:0004807
Car03g02528 314 Hamap Triosephosphate isomerase [tpiA]. 63 306 IPR022896 GO:0004807|GO:0006096
Car03g02528 314 PANTHER TRIOSEPHOSPHATE ISOMERASE 1 312 IPR000652 GO:0004807
Car03g02528 314 ProSitePatterns Triosephosphate isomerase active site. 222 232 IPR020861 GO:0004807
Car03g02528 314 Gene3D Aldolase class I 46 313 IPR013785 -
Car03g02528 314 PANTHER TRIOSEPHOSPHATE ISOMERASE, CHLOROPLASTIC 1 312 - -
Car03g02528 314 SUPERFAMILY Triosephosphate isomerase (TIM) 62 307 IPR035990 GO:0004807
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02528 Car-Chr3 71172831 71177339 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02528 K01803 - gmx:100799358 536.954