Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02473 ATGATGAATTCAGGAAACGGTATTATGACGCCGTCTTCTTCATCGGGTCCTGCACAGTCACCGGGTTTGAAAACCTATTTCAAAACCCCTGAAGGCCGTTATAAACTTCAATTCGAGAAATCTCACCCTTCTGGTCTCCCTCAATTCAATCATGGCAAAACCATTACTCTGGTAACACTGGCACATCTTAAGGAGAAGCCAGCGCCTTCAACTCCGACTGCTTCGTCTTCAAGTTTTAGTGCTAGCAGTGGGGTACGGTCGGCCGCAGCTAGATTGTTAGGAGGAGGAAGCAATGGAAGCCGGGCACTTAGTTTTGTTGGTGGAAACGGTAGTAGCAAAAGCAATGGAGGAAATGGTAGGATTGGTTTGACTGGTGCCTCGAGTTCGAGTAGTTCGGTGGCTAATCCAAATTTTGATGGGAAAGGATCATACTTGGTCTTCAATGCTGGGGATGCAATTTTGATAAGTGATTTGAATTCTCAAGACAAGGACCCCATAAAGTCTATTCACTTCAGTAATGCGAATCCTGTGTGCCACGCATTTGATCAGGAGTCTAAGGACGGCCATGATTTGCTCATAGGCTTGTTCTCTGGCGATGTCTACTCAGTATCACTGAGACAACAATTACAGGATGTTGGTAAAAAGATTGTTGGGGCCCACCATTACAACAAAGATGGTATTCTCAACAGCAGTCGTTGTACTTGTATTTCTTGGGTGCCTGGAGGTGATGGTGCTTTTATTGTTGCTCATGCTGATGGGAATTTGTACGTATATGAAAAGAATAAAGATGGTGCCGGTGATTCTTCATTCCCAATCATTAAAGATCAAACTCAGTTTTCTGTTGCCCATGCACGATACAGCAAGAGTAATCCAATAGCCAGATGGCATATATGCCAGGGTTCGATTAACAATATTTCTTTCTCCGCTGATGGGGTATACATGGCAACTGGTGGACGAGATGGTTACCTGCGAGTGTTTGATTATGCAAAAGAACAACTTATATGTGGCGGGAAAAGTTATTATGGTGCTTTATTATGTTGTGCTTGGAGcatggatggaaaatatattttgacgggaggagaagatgatttagttcaagtttggagcatggaagatcgcaaagttgttgcatggggtgagggacataactcatggGTTAGTGGAGTGGCTTTTGATTCATATTGGTCATCACCAAATTCTAATGACAATGGAGAGACAATTATGTATCGATTTGGTTCTGTTGGTCAGGATACACAATTGCTTCTATGGGACCTGGAAATGGACGAGATTGTAGTGCCCTTGAGGCGATATCCACCCGGTGGATCACCAACTTTTGGATCCCCGACGTTTAGTACTGGAAGTCAGTCATCCCATTGGGACAATGTCGTCCCATTGGGTACCTTACAACCTGCTCCAAGTATGCGGGATGTTCCAAAAATCTCTCCTCTTGTTGCTCACCGTGCGCATTCTGAGCCACTTTCTAGCTTGATATTTACCCAGGAATCTGTACTTACATCCTGCCGGGAGGGGCAAATCAAAATCTGGGCGAGACCTGGCACTGCCGAGAGCCAGACAAGCAACTCCGAAACCTTGTTAGCTACGAGTCTCAAGGAGAAGCCTCCACTTTCAAGCAAGATCAGCAATATTAGTTACAAACAATAA 1662 0.4182 MMNSGNGIMTPSSSSGPAQSPGLKTYFKTPEGRYKLQFEKSHPSGLPQFNHGKTITLVTLAHLKEKPAPSTPTASSSSFSASSGVRSAAARLLGGGSNGSRALSFVGGNGSSKSNGGNGRIGLTGASSSSSSVANPNFDGKGSYLVFNAGDAILISDLNSQDKDPIKSIHFSNANPVCHAFDQESKDGHDLLIGLFSGDVYSVSLRQQLQDVGKKIVGAHHYNKDGILNSSRCTCISWVPGGDGAFIVAHADGNLYVYEKNKDGAGDSSFPIIKDQTQFSVAHARYSKSNPIARWHICQGSINNISFSADGVYMATGGRDGYLRVFDYAKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNGETIMYRFGSVGQDTQLLLWDLEMDEIVVPLRRYPPGGSPTFGSPTFSTGSQSSHWDNVVPLGTLQPAPSMRDVPKISPLVAHRAHSEPLSSLIFTQESVLTSCREGQIKIWARPGTAESQTSNSETLLATSLKEKPPLSSKISNISYKQ 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02473 553 MobiDBLite consensus disorder prediction 518 534 - -
Car03g02473 553 ProSiteProfiles Trp-Asp (WD) repeats profile. 337 378 IPR001680 GO:0005515
Car03g02473 553 MobiDBLite consensus disorder prediction 108 132 - -
Car03g02473 553 PANTHER LOW QUALITY PROTEIN: WD REPEAT-CONTAINING PROTEIN 20-LIKE 3 547 - -
Car03g02473 553 SUPERFAMILY WD40 repeat-like 132 516 IPR036322 GO:0005515
Car03g02473 553 SMART WD40_4 479 516 IPR001680 GO:0005515
Car03g02473 553 SMART WD40_4 288 327 IPR001680 GO:0005515
Car03g02473 553 SMART WD40_4 372 424 IPR001680 GO:0005515
Car03g02473 553 SMART WD40_4 221 259 IPR001680 GO:0005515
Car03g02473 553 SMART WD40_4 330 369 IPR001680 GO:0005515
Car03g02473 553 ProSiteProfiles Trp-Asp (WD) repeats profile. 302 327 IPR001680 GO:0005515
Car03g02473 553 MobiDBLite consensus disorder prediction 1 26 - -
Car03g02473 553 PANTHER WD REPEAT PROTEIN 3 547 - -
Car03g02473 553 MobiDBLite consensus disorder prediction 1 22 - -
Car03g02473 553 MobiDBLite consensus disorder prediction 518 553 - -
Car03g02473 553 Pfam WD domain, G-beta repeat 344 369 IPR001680 GO:0005515
Car03g02473 553 Pfam WD domain, G-beta repeat 299 327 IPR001680 GO:0005515
Car03g02473 553 Gene3D - 13 525 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02473 305 431 Miscellaneous Gene Families AT5G08390 22.835 1.21e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02473 K24741 - gmx:100782580 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02473 03 70502487 70509532 Car03g02473 03 70502487 70509532 ECH