Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02433 ATGCCTCGCTACGATGATAAGTATGGCAATACCCGCCTCTATGTTGGTCGCTTGTCTTCACGAACTCGTTCCCGCGATCTGGAGCGGGTCTTCAGCAGATATGGGAGAGTCCGAGATGTTGATATGAAGCACGATTACGCCTTTGTTGAATTTAGCGATCCCCGTGATGCTGATGATGCAAGATACAATTTGGATGGTCGCGACGTCGATGGAAGTCGTCTTATCGTGGAATTTGCTAAAGGGGTTCCTCGGGGTTCCCGAGATTCTCGCGATTCTCGTGAATATTTGGGTCGTGGTCCACCTCCTggatcgggacgctgctttaactgtggcattgatggccactgggctcgagattgcaaAGCTGGGGATTGGAAGAACAAGTGTTACCGCTGTGGGGAGAGAGGTCATATAGAAAAGAACTGCAAGAACAGTCCCAAAAAGTTGAGCAGCAGACATGCACGTAGTGTTTCACGTTCACCAGGCAGGTCACGTTCTCCTAGGCGTGGCAGAAGCAGGGATCGAAGCTACAGCCCAGCCCGCAGCTATAGCCGATCAAGATCCCCGGTCAGAAGAGACCGAAGCCCAATTCCTGAAGATAGATCACGGAGTCCTCAGCCCTCCAAGTCAAGGAAGTATAGTCGATCTCCTGAAGGCAGTCCTCAAAAGAGCACATCTCCTGGTAATGATAGGGTTGTCGCAACCCAAGATGGGTCTGATTATAGCGATGGTCCTAGAGTGAAGAGTAGGAGCCCCTCAAGGGACAACGATGATAGCCCTAAGGCTAATGgccgcagccgcagccgtagccgtagccgcagccgcagccCCAGGGATGATAGGAGCCCCATAGAGGAAGATGATGACAACCGCCGTCACTCACCATCACCTTAA 894 0.4564 MPRYDDKYGNTRLYVGRLSSRTRSRDLERVFSRYGRVRDVDMKHDYAFVEFSDPRDADDARYNLDGRDVDGSRLIVEFAKGVPRGSRDSRDSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSSRHARSVSRSPGRSRSPRRGRSRDRSYSPARSYSRSRSPVRRDRSPIPEDRSRSPQPSKSRKYSRSPEGSPQKSTSPGNDRVVATQDGSDYSDGPRVKSRSPSRDNDDSPKANGRSRSRSRSRSRSPRDDRSPIEEDDDNRRHSPSP 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02433 297 SUPERFAMILY RNA-binding domain, RBD 7 106 IPR035979 GO:0003676
Car03g02433 297 MobiDBLite consensus disorder prediction 147 170 - -
Car03g02433 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 81 IPR000504 GO:0003723
Car03g02433 297 MobiDBLite consensus disorder prediction 243 265 - -
Car03g02433 297 MobiDBLite consensus disorder prediction 140 297 - -
Car03g02433 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Car03g02433 297 Gene3D - 3 84 IPR012677 -
Car03g02433 297 Gene3D - 127 173 - -
Car03g02433 297 MobiDBLite consensus disorder prediction 171 207 - -
Car03g02433 297 Pfam Zinc knuckle 127 144 IPR001878 GO:0003676|GO:0008270
Car03g02433 297 Pfam Zinc knuckle 106 121 IPR001878 GO:0003676|GO:0008270
Car03g02433 297 MobiDBLite consensus disorder prediction 209 236 - -
Car03g02433 297 SMART c2hcfinal6 106 122 IPR001878 GO:0003676|GO:0008270
Car03g02433 297 SMART c2hcfinal6 128 144 IPR001878 GO:0003676|GO:0008270
Car03g02433 297 ProSiteProfiles Zinc finger CCHC-type profile. 128 144 IPR001878 GO:0003676|GO:0008270
Car03g02433 297 ProSiteProfiles Zinc finger CCHC-type profile. 106 121 IPR001878 GO:0003676|GO:0008270
Car03g02433 297 SMART rrm1_1 12 77 IPR000504 GO:0003723
Car03g02433 297 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 6 282 - -
Car03g02433 297 SUPERFAMILY Retrovirus zinc finger-like domains 97 145 IPR036875 GO:0003676|GO:0008270
Car03g02433 297 MobiDBLite consensus disorder prediction 273 297 - -
Car03g02433 297 Gene3D - 85 126 - -
Car03g02433 297 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS2Z33 6 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02433 Car-Chr3 70201637 70204962 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02433 K12896 - gmx:100813237 406.371