Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02424 ATGGATTATTTCGGTCACGTGCACGGTATCAGCCCTCTTTCTGAACCCACCACACCAACCACCCCAAGACCCACCTTATTCCTCTCCACTTCCGGCAAAGCTCTTCTCGTCTCCAACTCCAACAAATCCCTCGTCATTTCCAATTCTGGCAAACGTCTCGACACAATCAATAGCAAGAAGAAGTATGTCAAACAAGTCACCGGTCGTCATAATGATACGGAACTTCATCTCGCCGCGCAACGTGGCGATGCCGCCGCCGTTAGACAAATTCTCGCTGAGATTGATGATCAGATGATGGGAACGCTTAGTGGTGCTGAGTTTGATGCGGAGGTTGCTGATATTAGGTCTGCTATTGTGAATGAGGTTAATGAGTTGGGTGAAACTGCTTTGTTCACCGCTGCTGAGAAAGGTCGTTTTGATGTTGTTAAGGAACTTCTTCCTTTTACCACTAAGGAGGCTCTTTCTTTGAAGAATCGCTCTGGTTTTGATCCCTTGCATATTGCAGCAAACCAAGGTCACCGAGCTATTGTGCAGTTGCTACTAGACCATGATCCAGAGCTAATCAAAACATTTGCACAGTCAAATGCAACTCCTCTTGTATCTGCAGCTACAAGAGGACATGCAGATGTTGTTGAACTGTTACTATCATGTGATCCTAGTCAGTTGGAGATAGCTAGATCCAATGGAAAGAATGCACTCCATTTATCTGCACGCCAAGGATATGTTGATGTTGTCAAGATATTGCTAGCGAAGGACCCGCAGCTTGCTCGAAGGACTGATAAGAAAGGACAAACTCCCCTGCATATGGCTGTCAAAGGTGTTAGCTGTGAAGTTGTGAAGTTGCTTCTTCGTGCTGATGCTGCGAGTGTCATGCTTCCTGACAGGTTTGGAAACACCGCATTGCATGTAGCGACCAGGAAGAAGAGGGCAGAGATAGTGAATGAGTTACTGCTTCTTCCTGACACCAATGTAAATGCCCTCACAAGAGAACACAAAACAGCTCTTGACCTTGCAGAAGCACTTCCAATATCTGAAGAAATTTTGGAGATCAAGGATTCCCTGATTCGTTATGGTGCAGTTAAAGCCAATGATCTCAACCAGCCAAGGGACGAGCTAAGGAAAACCATGACACAGATTAAGAAAGATGTTTCTTTTCAGCTTGAACAGACTCGGAAAACAAACAAGAATGTGAGTGGGATTGCCAAGGAGCTACGCAAGTTGCACAGAGCAGGAATCAACAATGCTACCAACTCAGTAACTGTGGTTTCTGTGCTATTCGCAACGGTTGCATTTGCAGCCCTTTTCACGGTCCCTGGTGGAGATGATTCTAATGGGATGGCTGTGATGGTGCACACTGTATCTTTCAAGACCTTCTTTCTCTCTAATGCTATTGCACTTTTCACTTCATTGGCTGTGGTGGTGGTTCAAATAACAGTTGTTAGAGGGGAGATAAAGTCTGAGAGGAAGGTTGTCGAGGTGATCAATAAGATGATGTGGTTAGCCTCTGTCTGCACCTCAGTTTCATTCATTGCGGCATCTTATATAGTAGTTGGTCGGCGCAGCAAGTGGGCTGCAATCCTTGTTACTGTTGTAGGGGGGGTTATAATGGGGGGTGTTCTTGGTACCATGACATATTACGTGGTCAAAACCAAACGTCATCGGAGAGTGAGGAAGAAAGAGAAGATCTCAAGGATTGGAACCCACTCATGGCGTCATACCGATTCCGAATCAGAAGTAAATCCAATCTATGCTATTTAA 1758 0.4539 MDYFGHVHGISPLSEPTTPTTPRPTLFLSTSGKALLVSNSNKSLVISNSGKRLDTINSKKKYVKQVTGRHNDTELHLAAQRGDAAAVRQILAEIDDQMMGTLSGAEFDAEVADIRSAIVNEVNELGETALFTAAEKGRFDVVKELLPFTTKEALSLKNRSGFDPLHIAANQGHRAIVQLLLDHDPELIKTFAQSNATPLVSAATRGHADVVELLLSCDPSQLEIARSNGKNALHLSARQGYVDVVKILLAKDPQLARRTDKKGQTPLHMAVKGVSCEVVKLLLRADAASVMLPDRFGNTALHVATRKKRAEIVNELLLLPDTNVNALTREHKTALDLAEALPISEEILEIKDSLIRYGAVKANDLNQPRDELRKTMTQIKKDVSFQLEQTRKTNKNVSGIAKELRKLHRAGINNATNSVTVVSVLFATVAFAALFTVPGGDDSNGMAVMVHTVSFKTFFLSNAIALFTSLAVVVVQITVVRGEIKSERKVVEVINKMMWLASVCTSVSFIAASYIVVGRRSKWAAILVTVVGGVIMGGVLGTMTYYVVKTKRHRRVRKKEKISRIGTHSWRHTDSESEVNPIYAI 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02424 585 PANTHER CASKIN 35 578 - -
Car03g02424 585 Gene3D - 185 385 IPR036770 -
Car03g02424 585 SUPERFAMILY Ankyrin repeat 75 355 IPR036770 -
Car03g02424 585 Gene3D - 39 184 IPR036770 -
Car03g02424 585 ProSiteProfiles Ankyrin repeat profile. 160 187 IPR002110 GO:0005515
Car03g02424 585 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1 35 578 - -
Car03g02424 585 SMART ANK_2a 125 153 IPR002110 GO:0005515
Car03g02424 585 SMART ANK_2a 160 189 IPR002110 GO:0005515
Car03g02424 585 SMART ANK_2a 70 99 IPR002110 GO:0005515
Car03g02424 585 SMART ANK_2a 228 257 IPR002110 GO:0005515
Car03g02424 585 SMART ANK_2a 262 292 IPR002110 GO:0005515
Car03g02424 585 SMART ANK_2a 296 326 IPR002110 GO:0005515
Car03g02424 585 SMART ANK_2a 194 223 IPR002110 GO:0005515
Car03g02424 585 ProSiteProfiles Ankyrin repeat region circular profile. 160 187 - -
Car03g02424 585 Pfam Ankyrin repeats (3 copies) 260 325 IPR002110 GO:0005515
Car03g02424 585 Pfam Ankyrin repeats (3 copies) 75 184 IPR002110 GO:0005515
Car03g02424 585 Pfam Ankyrin repeats (3 copies) 194 253 IPR002110 GO:0005515
Car03g02424 585 ProSiteProfiles Ankyrin repeat profile. 262 287 IPR002110 GO:0005515
Car03g02424 585 ProSiteProfiles Ankyrin repeat profile. 296 329 IPR002110 GO:0005515
Car03g02424 585 Pfam Domain of unknown function 412 516 IPR026961 -
Car03g02424 585 ProSiteProfiles Ankyrin repeat region circular profile. 262 287 - -
Car03g02424 585 ProSiteProfiles Ankyrin repeat region circular profile. 228 249 - -
Car03g02424 585 MobiDBLite consensus disorder prediction 1 22 - -
Car03g02424 585 ProSiteProfiles Ankyrin repeat profile. 228 260 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02424 Car-Chr3 70133418 70136815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02424 14 585 Miscellaneous Gene Families AT3G09550 74.150 0.0 854
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02424 - - gmx:100801840 858.981