Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02350 ATGGAGGATTCTGGAAAATCCACCACCACCAGCACGAGTAAAACTAGTAAACTATTGAATCCATGGATGCTTCACTTTCAAAAACTCGCTCTCGAACTCAAATGCCCTCTCTGCCTGAGCTTGTTCAAGCAACCGGTATTGCTTCCATGCAATCACTTGTTCTGTAGTTCCTGCTTGGTGGATTGTACAACGACTGGTTCTGAATGTGCTCTGTGTAACACTAAGTACGCTCAAATAGATATAAGGCATGTGCCTTTTGTGGAAAATGTGGTATCGATCTATAAGAGCTTGGATGCAAATTTTTGTGCTAACTTGTTTCAGCAACGCTCTTCTGATGATCTTAGGGTTTTGGAGCGGTGCCAAAATTTTCCCAATTCAACTTGTAGTAATAAGATGGCTGATGAGGTTATGCAGAATTCATGTATTTCTCATGAGGTTGGGGTTAGCAAGAATGACAAAACCAATATTACAATGCATGGTAGGGGAGCGATTGACGGTATTGTAGGGAAGCCTAATTCAATGGGATGTTCCCAGACCGAAATTGGGGGTCGTGTCGAAATGGACGTGAATCAAGTGACAGCATCAGCACCAGACAGCCCTCCATTTTGTGATACCAAAGGTTCTCATAATGATTGCAGCGATCAAGACATTGAGCAGCCATTCAATCTTGGAAGATTGGAAAATTCGTCATTAAAAAGAACAAGCACAGGAAAAAGTAATTTGAATGAAAGAATGGCTCAGTTCAGGTCTGAAAGTTCTGCCTCTGAAAATGAGGGTCTTATGAGAGATCTTAAGAGACAAAAAATCCTCACTAATGGAGATGGTGTTATTCAACATTGCACCACACATCATAATAAGCTTGTGGATTCCCACTGCGACTCCCTTAAAATTGAAAAGGACCTTGGTGCACTCAAGCCTTCAAATGCACCAAATGGCTTGTACCCATGTACAAGCATCTGTTTGTTTTGCCAGTCCTCCGTAATTTCAGAGGCTACTGGGCCAATGCTGCATTATGCATATGGGATTTCAGTTACCGGAGATGCTGCAATGCAACCAAATGTCATACATGTGCACAGAGTTTGCATTGACTGGGCACCACAAGTGTATTTTGTCGGCGAAACTGTTAAGAATTTGAAGGCAGAAGTGGCCAGGGGAGCAAAGCTTAAATGCACCAAATGTGGTCTAAAGGGAGCTGCTCTTGGTTGCTATGTCAAATCATGTAGACGAACTTATCATGTTACTTGTGCAATGGACATCTCTACTTGCCGTTGGGATCATGTGGATTTTCTATTGCTATGTCCTGTTCATTCAAATGTCAAATTTCCAAATGAGAAATCCAGGCATAATAAACAGGCAATTCAGAAGCATCCTGTTTCATCACATCTGCCATTTCAACAGTCAAACCAACTTGGAGCTTTACAAGATGATGACAAAAAAATGGTTTTCTGTGGATCTGCTCTATCAAATGAAGAAAAGGTGCTATTGATTAATTTTGCAAGTAAGGTTGGTGCTACAGTGACCAAGTTTTGGACCTCAGATGTCACCCATGTGATTGCAGCAACTGATGCAAATGGAGCATGCACCAGGACATTGAAAGTTTTAATGGCAATTCTAAATGGACAATGGATCCTAAAAATGGACTGGATAAGAGCATGCATGGAAGTGACAGGTCTTGTAGATGAAGTGCTGTACGAAATTGATCTTGACAACCAAGGGTGTAATGGTGGCCCAAAAGCTGGCCGACTTAGGGCATTGGCCAATGAGCCAAAGCTATTCAGTGGCCTTAAGTTTTATTTTTCTGGTGATTATGATTTGAGTTATAAAGAAGATCTTGAAGATTTAGTTGAAGCAGGAGGCGGTGCTGTTTTGAGAAGCAAGGATGAATTGGAAGTTAGAAGAGATGCAAATTTACTTGTTGTTTATAATCTTGATCCCCCACAAGGATGTAAGCTGGGGGAGGAAGTGTCAATTCTTTGGCAGAGACTGAATGGAGCAGAGGATCTAGCTGCCAATACCCGTGGCCAAGTCATTGGTCACACGTGGATTCTGGAGTCAATTGCTGCATGTAAATTGCAGCCTTTTGTTAGCTAA 2091 0.4185 MEDSGKSTTTSTSKTSKLLNPWMLHFQKLALELKCPLCLSLFKQPVLLPCNHLFCSSCLVDCTTTGSECALCNTKYAQIDIRHVPFVENVVSIYKSLDANFCANLFQQRSSDDLRVLERCQNFPNSTCSNKMADEVMQNSCISHEVGVSKNDKTNITMHGRGAIDGIVGKPNSMGCSQTEIGGRVEMDVNQVTASAPDSPPFCDTKGSHNDCSDQDIEQPFNLGRLENSSLKRTSTGKSNLNERMAQFRSESSASENEGLMRDLKRQKILTNGDGVIQHCTTHHNKLVDSHCDSLKIEKDLGALKPSNAPNGLYPCTSICLFCQSSVISEATGPMLHYAYGISVTGDAAMQPNVIHVHRVCIDWAPQVYFVGETVKNLKAEVARGAKLKCTKCGLKGAALGCYVKSCRRTYHVTCAMDISTCRWDHVDFLLLCPVHSNVKFPNEKSRHNKQAIQKHPVSSHLPFQQSNQLGALQDDDKKMVFCGSALSNEEKVLLINFASKVGATVTKFWTSDVTHVIAATDANGACTRTLKVLMAILNGQWILKMDWIRACMEVTGLVDEVLYEIDLDNQGCNGGPKAGRLRALANEPKLFSGLKFYFSGDYDLSYKEDLEDLVEAGGGAVLRSKDELEVRRDANLLVVYNLDPPQGCKLGEEVSILWQRLNGAEDLAANTRGQVIGHTWILESIAACKLQPFVS 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02350 696 Coils Coil 238 258 - -
Car03g02350 696 Pfam BRCT domain, a BRCA1 C-terminus domain 589 693 IPR001357 -
Car03g02350 696 Pfam BRCA1 C Terminus (BRCT) domain 479 553 IPR001357 -
Car03g02350 696 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 15 694 - -
Car03g02350 696 Gene3D BRCT domain 589 689 IPR036420 -
Car03g02350 696 ProSiteProfiles BRCT domain profile. 587 696 IPR001357 -
Car03g02350 696 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 107 IPR013083 -
Car03g02350 696 SUPERFAMILY BRCT domain 480 567 IPR036420 -
Car03g02350 696 SUPERFAMILY BRCT domain 591 693 IPR036420 -
Car03g02350 696 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 15 694 IPR031099 GO:0006281|GO:0006974
Car03g02350 696 CDD BRCT_Bard1_rpt1 481 559 - -
Car03g02350 696 Gene3D BRCT domain 476 582 IPR036420 -
Car03g02350 696 ProSiteProfiles Zinc finger RING-type profile. 35 73 IPR001841 -
Car03g02350 696 SMART BRCT_7 589 689 IPR001357 -
Car03g02350 696 SMART BRCT_7 470 556 IPR001357 -
Car03g02350 696 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 439 IPR013083 -
Car03g02350 696 SUPERFAMILY RING/U-box 32 95 - -
Car03g02350 696 ProSiteProfiles Extended PHD (ePHD) domain profile. 317 437 IPR034732 -
Car03g02350 696 Pfam PHD-like zinc-binding domain 358 436 - -
Car03g02350 696 Pfam Zinc finger, C3HC4 type (RING finger) 32 77 - -
Car03g02350 696 CDD ePHD 355 436 - -
Car03g02350 696 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Car03g02350 696 SMART ring_2 35 72 IPR001841 -
Car03g02350 696 ProSiteProfiles BRCT domain profile. 477 566 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02350 Car-Chr3 69424711 69431222 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02350 K10683 - gmx:100784883 962.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02350 03 69424711 69431222 Car03g02350 03 69424711 69431222 ECH