Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02293 ATGGCAACCATCATTGCTGGCACCCCAACATCTTCTTCGATCATCCGCAGTACAGGTATTGTGCATAAGCAACCTCTTGGAGTCTCATTCCAGACCCTCGTTGGATTGCCATCAATGTGTAAGGTGGGAAGAGTGAGGTGTTCCATTATGGAAAAGTCTTTTGTAAAGGAAAACAGCTCAAACATAGGAATGGGAGCATCATTGATAGCAGCTATCTGCGCTACAACGTTGTCAAGCCCAGCAGCAATTGCTTTGGTGGATGAAAGAATGAGCACCGAAGGAACTGGGCTTCCTTTTGGGCTTAGCAACAACCTTCTTGGTTGGATCCTTTTTGGTGTGTTTGGTCTTATATGGACTCTCTATTTTATCTACGCGTCCTCGCTTGATGAGGATGAAGACTCTGGATTGTCTCTGTAA 417 0.4532 MATIIAGTPTSSSIIRSTGIVHKQPLGVSFQTLVGLPSMCKVGRVRCSIMEKSFVKENSSNIGMGASLIAAICATTLSSPAAIALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTLYFIYASSLDEDEDSGLSL 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02293 138 Pfam Photosystem II reaction centre W protein (PsbW) 1 138 IPR009806 GO:0009507|GO:0009523|GO:0015979
Car03g02293 138 PANTHER PHOTOSYSTEM II REACTION CENTER W 1 138 - -
Car03g02293 138 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 1 138 IPR009806 GO:0009507|GO:0009523|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02293 Car-Chr3 68903551 68905976 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02293 K02721 - gmx:100526966 171.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02293 03 68903551 68905976 Car03g02293 03 68903551 68905976 ECH
Car03g02293 03 68903551 68905976 Car04g00149 04 1483040 1484408 ECH
Car03g02293 03 68903551 68905976 Car04g00149 04 1483040 1484408 PCT