Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02264 ATGGATGAAGAAGTCGTAACGGAAAGCAGAAAAGAAACAGAAGTAGCACCGGCACTCGTCTCCGTCCATCCAGACGGACACTACGTCGCCGTCGCAGTCGGACCGGAGCTCCGCGTCTTCGACCTCATTGGCGGTTGTGCAGCTTCTTTAGTTGACGATTCCGTTGACCAACCCTTCCATAAGGATAATATTAGAGCCATTCGATTCGGTGCAAATGGAAAACTCTTCGTTTCCGCTGGTGATGATAAAACCCTCAAGATTTGGTCATCGCAATCTTGGCAATGCATTTCCACCGTGTCATCGGAAAAGAGAGTTACTGCGGTTGCGATAAGCAATGACGGTTTACATGTGTGTTTTGCTGATAAATTCGGTCTCGTTTGGGTTGTGGATCTCAATCAACCTTCACGTGATAAGAAGCCAACACCGCTTCTTTCTCATTATTGTAGTATCATCACTAGCTTGGAATTTTCACCAGATAATCGGTTTATTTTGAGTGCTGATAGGGATTTTAAAATTCGTGTTACTAATTTTCCCAACAATCCCTTAAATGGAGCTCACCAGATACAGAGTTTTTGTCTTGGTCATACAGAGTTTGTTTCCTGCCTTGCCTTTGTTCCTGCTCAGGAAGGTCCTCATAGTCTTCTTTTATCTGGCAGTGGTGATTCCACAGTCCGATTGTGGGATATCTCCTCTGGAGCACTCCTAGACACTTGTGAGGTTGCAGTTAAGGCAGGACTTTTAGAGTCCAACGGTAAAGCAGAGGAGCATGACCATGCTGTCACTAATTTGTGTACCACACTGGATGGTTTGCTTGTTGCTGTGTCCATTCAGAGGCAAGTCTCTTGCTATTGTATTCTCTTGCGTGGAATTGTATTGTTGCGCTGCAATGTTTCTGCGCAAACACTTTCTGTTGCCAAGGTTGTTTCTATTGCAGGAGAGGCCTTTATACCTACCTGCCTGGCGAACAACCCCCTTACAAGGGAATTGTGGATGGTTACAGGTGTCTCTAATTTACCTGGTTATAATTACCCCTCTTTGGCTCGTGTCCTAGTAATTTCTGGTATTGATGTTGAGCAAGAGCCAGTTGTTCTGGGTGACAATAAGATACCTGGAGGAGAAAAGCTGCTAGAAACATTGCAAGGAACTGCATCTGTTGACGATAATGCTTTTCTGCTGTTTTGGttaattttagtttttGAGATCAAACAAGAAGCTAGAAAGAGAGTACTTATGCTGCTAAGGAACAGATCAAGAGCAGTGACGAAGCCAAATTTAATGGCTGATCACAGTTCTCAACAATCTTCCAATAATCAAAATTGTACCAAAAAAACAATCCCTTCTTTATTTGGTTCACCAAAATTCAAAGATTTcaccaacaacaacaacaacaaTAGTACTCTTTTTGGAACTGACCATGTTTTAAAAAGCCCAACTTCAATTCTTGACACTAGATTGTTATCACCCTATGGCTTTAAAAATCCATTCTTTCATGACAAAAACACAACACAAATTATTCCCAACAAAACCTCTTGGGACAAAAAAGATTCAAGAGGCATTGGTGTTGCTCTTTTTGAGAATTCTTTTGAACCAAACAAAGGAAATGTCCTGTTTGGAACACAACTTAAGGTTAAAATCCCATTTGAGTGTCAACCATGTAGTGGTGGTGATTATTTTGGGACCAAAACTAAGGATTCTCCAAACATAGGACTTATTATGTCTTTGAGTGAGATGGAACTTAGTGAGGAATATACATGTGTCATATCACATGGTGCTAATCCAAGAACAACTCATATATTCAATAATTACATTGTGGAGGAGAATTACTGTTCATTGCCACAAAACTCTAATTCTGTTTATGAGAATTTCCTTAGAGTATGTTACACTTGCAAGAAACATCTTGAGCAAACAAAGGATATCTTTATTTATAGAGGAGAGAAAGCTTTCTGCAGTAGAGAATGCAGGCACAGAGAAATGGTGTTAGATGGTGTAGAAGGTTTAGAATTTCAAAGATGA 2013 0.4014 MDEEVVTESRKETEVAPALVSVHPDGHYVAVAVGPELRVFDLIGGCAASLVDDSVDQPFHKDNIRAIRFGANGKLFVSAGDDKTLKIWSSQSWQCISTVSSEKRVTAVAISNDGLHVCFADKFGLVWVVDLNQPSRDKKPTPLLSHYCSIITSLEFSPDNRFILSADRDFKIRVTNFPNNPLNGAHQIQSFCLGHTEFVSCLAFVPAQEGPHSLLLSGSGDSTVRLWDISSGALLDTCEVAVKAGLLESNGKAEEHDHAVTNLCTTLDGLLVAVSIQRQVSCYCILLRGIVLLRCNVSAQTLSVAKVVSIAGEAFIPTCLANNPLTRELWMVTGVSNLPGYNYPSLARVLVISGIDVEQEPVVLGDNKIPGGEKLLETLQGTASVDDNAFLLFWLILVFEIKQEARKRVLMLLRNRSRAVTKPNLMADHSSQQSSNNQNCTKKTIPSLFGSPKFKDFTNNNNNNSTLFGTDHVLKSPTSILDTRLLSPYGFKNPFFHDKNTTQIIPNKTSWDKKDSRGIGVALFENSFEPNKGNVLFGTQLKVKIPFECQPCSGGDYFGTKTKDSPNIGLIMSLSEMELSEEYTCVISHGANPRTTHIFNNYIVEENYCSLPQNSNSVYENFLRVCYTCKKHLEQTKDIFIYRGEKAFCSRECRHREMVLDGVEGLEFQR 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02264 670 Gene3D - 16 101 IPR015943 GO:0005515
Car03g02264 670 ProSiteProfiles Zinc finger FLZ-type profile. 621 665 IPR007650 -
Car03g02264 670 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 192 232 - -
Car03g02264 670 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 57 89 - -
Car03g02264 670 SUPERFAMILY WD40 repeat-like 20 283 IPR036322 GO:0005515
Car03g02264 670 SMART WD40_4 184 228 IPR001680 GO:0005515
Car03g02264 670 SMART WD40_4 92 130 IPR001680 GO:0005515
Car03g02264 670 SMART WD40_4 137 176 IPR001680 GO:0005515
Car03g02264 670 SMART WD40_4 246 284 IPR001680 GO:0005515
Car03g02264 670 SMART WD40_4 43 89 IPR001680 GO:0005515
Car03g02264 670 Pfam WD domain, G-beta repeat 192 228 IPR001680 GO:0005515
Car03g02264 670 Pfam WD domain, G-beta repeat 60 89 IPR001680 GO:0005515
Car03g02264 670 Pfam WD domain, G-beta repeat 145 174 IPR001680 GO:0005515
Car03g02264 670 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Car03g02264 670 Pfam zinc-finger of the FCS-type, C2-C2 619 661 IPR007650 -
Car03g02264 670 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 237 IPR001680 GO:0005515
Car03g02264 670 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 26 418 IPR028884 GO:0036265
Car03g02264 670 Gene3D - 102 296 IPR015943 GO:0005515
Car03g02264 670 ProSitePatterns Trp-Asp (WD) repeats signature. 215 229 IPR019775 -
Car03g02264 670 PANTHER WD40 REPEAT PROTEIN 4 18 385 IPR028884 GO:0036265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02264 Car-Chr3 68627907 68636870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02264 60 235 Miscellaneous Gene Families AT5G08390 23.889 8.87e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02264 K15443 - gmx:100786310 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02264 03 68627907 68636870 Car03g02264 03 68627907 68636870 ECH