Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02228 ATGGCAAATCTCTTACCATCATTTTCATTCTCACTGATTCCACTTGATCATCATCATAATCACGGAACCAAATGTTCCTTCTTTCACACTCCCTTTATTCAAATTAAGCATCAGCACCAACTTGTTGGTAAAAACTTGCAAGATCTCATCATAAGCCCCTTTTCCCATAATCTCACTTCAAAATTGTGTGCCACGTCAAGATTGTCTGTGGAAGAAACTGAGCAAAAGTTCAGCACTTTTACACAATCTGAAGACATCAAAACAGCATTGTCTTATTTGTTTCGGACAGAAATAGGTGAAGGTTTGGTTAAAGTTTATGTTAAAAAGAAAAAAGTTACTTATTTTGTTTATATTGAGGTTTCTTCTTTGGAGTTAGTTAGAGCTGAAGGGGAAACATTGGTGTTGTGTTGGGGTGTGTATAGAGATGATTCCTTAAGTGTGAATGTTGGAAAAGGGATGAATGTGAGTCCCTTTGTGCAAAATTCTCTTGGAAAGTTTTCAGTTGAATTGGAATTTGATGTTGAACAAGTTCCTTTTTATTTGTCGTTTTTGTTGAGATATTCTGGGTTGGAAATCAGAACCCATATGAAAAGGAATTTCTGTGTTCCTGTTGGTTTTTATAAGGGGTGCCCATCTCTATTGGGGCTCTCTTTTTCGCCTGACGAGTCAGTTAATTTTGCTGTATTTTCAAGGCGTGCCGAGAGTGTGGTATTGTGTTTATATGATGATGACAATGATAGTGTGGAGAAGCCTGCATTGGAGCTTGATCTTGATCCTTATGTCAATAGGTCAGGGGATATCTGGCATATCTCTTTTGAGAGTGTCGGGAATTTTGTGAGATACGGCTATCGCTTGGGAGGAGCTCACAGGGATAACAGTTATGCTGAGTGTGTTGTTTTGGACCCGTATGCTAGAATTGTCGGGAATTCTTTTCCTAATGGTATTGGGTCCGTGAAGAACCTTGGATTTTTGAAAAAGGATCCTGCTTTTGATTGGGGGGATGATTATCATCTGAATTTGGACATGGAGAAACTACTGGTGTATAGGTTGAATGTGAAGCGCTTTACCGAGCACGAGTCCAGTCAACTTCCCGGTGATTTAGCTGGGACATTTTCTGGTTTGGCTAAAAAGGTGCAGCATTTTAAAGATCTAGGTATGAATGCTGTTCTGTTGGAGCCAGTTTTCACATTTGACGAGGAAAAGGGACCTTATTTTCCTTGTAATTTTTTCTCTCCCATGAACCTTTATGGAAAATCTGGTGATCCTGTATCTACAATAAACTCTATGAAAGACATGGTGAAAACTATGCATGCCAATGGGATAGAAGTTCTCATGGAAGTTGTTTTTTCCAATACTGCTGAGACCGGTGCTCTGCATGGTATTGATGATTTATCTTACTATTATGCAAATGGCGTTGGTGGTTTGAAGGTACAAAGTGCTTTGAACTGTAACTATCCTATAATGCAAAATTTGATTCTGGATAGCCTTAGGTATTGGGTAACTGAGTTTCACATTGATGGTTTCTCTTTTGTAAATGCTTCACATTTGTTGAGGGGGTTTCATGGAGAATACTTGTCTCGACCTCCGTTGGTTGAAGCGATTGCTTTCGATCCGATACTGTGGAAAACTAAAATTATAGCAGATTGTTGGGATCTCAATGCCATGGAAGCAAAGGAGATTCGCTTTCCTCATTGGATGAGATGGGCTGAAATAAATACAAATTTTTGTAACGATGTGAGGAACTTTCTAAGGGGTGAAAATCTTCTTAGCAACCTTGCAACAAGACTTTGTGGGAGTGGGGACATGTATTCTTGTGGAAGAGGCCCTGCATTCTCTTTTAATTACATTGCAAGGAATTTCGGACTTTCTCTCGTGGACTTGGTCAGCTTCAGCAGTGCTGATCTAGACGTGGAGTTGAGTTGGAATTGCGGAGAAGAAGGACCTACTAATAACACTGCTGTCCTTGAAAGACGACTCAAACAAATCCGTAATTTCCTATTCATCTTGTTTGTGTCATTAGGAGTACCTGTTTTGAACATGGGAGATGAGTGTGGTTATTCTTCTGGTGGTTCTCCTGCATATGGTGACACAAAACCCTTCAATTGGGCTGCTTTGAAAACAGGTTTTGGTAAACAAACCACACAGTTCATTTCCTTTTTGACTTCATTGAGAAAGAGGCGGAGCGATCTTCTTCAGAGTAAGAGCTTCTTAAAAGAAGAAAACATTGAATGGCGCGGAGTCGACAATGCTCCGCCAAGATGGGAAGACCCATCCTGCAAGTTCCTGGCCATGAATTTGAAGGCTGAAAAAGGGGAGCTTCAAGAGAGCTCTGTGTCCTCTGATATATTAGGGGATTTATTTATTGTTTTCAATGCAGATGATCATCCAGAAACTGTAGTTTTACCCTTGCTTCCAGAAGGGGTGTCATGGTACCGCTTAGTTGATACAGCTCTTCCATTTCCTGGGTTTTTCTTAACCAATGGTGATTTTGTCCCTGAGCAAATATCAGGTTTGTGTACTTATGAAATGAAGTCTTACAGCTGCACTTTGTTTGAGGCAAACAATAGTACCAGTTAG 2577 0.4012 MANLLPSFSFSLIPLDHHHNHGTKCSFFHTPFIQIKHQHQLVGKNLQDLIISPFSHNLTSKLCATSRLSVEETEQKFSTFTQSEDIKTALSYLFRTEIGEGLVKVYVKKKKVTYFVYIEVSSLELVRAEGETLVLCWGVYRDDSLSVNVGKGMNVSPFVQNSLGKFSVELEFDVEQVPFYLSFLLRYSGLEIRTHMKRNFCVPVGFYKGCPSLLGLSFSPDESVNFAVFSRRAESVVLCLYDDDNDSVEKPALELDLDPYVNRSGDIWHISFESVGNFVRYGYRLGGAHRDNSYAECVVLDPYARIVGNSFPNGIGSVKNLGFLKKDPAFDWGDDYHLNLDMEKLLVYRLNVKRFTEHESSQLPGDLAGTFSGLAKKVQHFKDLGMNAVLLEPVFTFDEEKGPYFPCNFFSPMNLYGKSGDPVSTINSMKDMVKTMHANGIEVLMEVVFSNTAETGALHGIDDLSYYYANGVGGLKVQSALNCNYPIMQNLILDSLRYWVTEFHIDGFSFVNASHLLRGFHGEYLSRPPLVEAIAFDPILWKTKIIADCWDLNAMEAKEIRFPHWMRWAEINTNFCNDVRNFLRGENLLSNLATRLCGSGDMYSCGRGPAFSFNYIARNFGLSLVDLVSFSSADLDVELSWNCGEEGPTNNTAVLERRLKQIRNFLFILFVSLGVPVLNMGDECGYSSGGSPAYGDTKPFNWAALKTGFGKQTTQFISFLTSLRKRRSDLLQSKSFLKEENIEWRGVDNAPPRWEDPSCKFLAMNLKAEKGELQESSVSSDILGDLFIVFNADDHPETVVLPLLPEGVSWYRLVDTALPFPGFFLTNGDFVPEQISGLCTYEMKSYSCTLFEANNSTS 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02228 858 Pfam Alpha amylase, catalytic domain 369 455 IPR006047 GO:0005975
Car03g02228 858 Gene3D - 740 858 IPR013780 -
Car03g02228 858 PANTHER GLYCOGEN DEBRANCHING ENZYME 64 856 - -
Car03g02228 858 CDD AmyAc_plant_IsoA 341 732 IPR044096 GO:0019156|GO:0019252
Car03g02228 858 Gene3D Immunoglobulins 202 318 IPR013783 -
Car03g02228 858 CDD E_set_GDE_Isoamylase_N 214 349 IPR044505 -
Car03g02228 858 SUPERFAMILY E set domains 209 337 IPR014756 -
Car03g02228 858 SUPERFAMILY (Trans)glycosidases 330 728 IPR017853 -
Car03g02228 858 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 214 304 IPR004193 GO:0004553|GO:0005975
Car03g02228 858 PANTHER ISOAMYLASE 2, CHLOROPLASTIC 64 856 - -
Car03g02228 858 SMART aamy 349 727 IPR006047 GO:0005975
Car03g02228 858 SUPERFAMILY Glycosyl hydrolase domain 739 853 - -
Car03g02228 858 Gene3D Glycosidases 326 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02228 Car-Chr3 68289125 68292164 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02228 46 858 Glycoside Hydrolase AT1G03310 57.211 0.0 917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02228 K01214 - gmx:100777953 1262.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02228 03 68289125 68292164 Car03g02228 03 68289125 68292164 ECH