Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02138 ATGGACAAGTCACCACTCTTATTCTTCCAAATCACCTTATTCCTTCTCATCCAATCACTCCTTGCCACGTCACACCCCATCCCCGTTACGGTTTCCGTCACCGACTTCGGTGCCGCCGGCGACGGAATCCGCTATGACACCTCATCAATCCAGTCCGCCATCGACTCCTGTCCATCCAGCGTCCCCTGCCGCGTCATCTTCCCGGCACCGGGAAAGTACCTGACGGCAACCGTGTTTCTGAGATCCGGCGTGGTGCTTAACGTGGAAACCGGTGCCACCATCCTTGGCGGGGCGAGGCTTGAAGATTACCCGAAGGAGTCGTCAAGATGGTACGTGGTGTTGGCGGAGAATGCGACGGACGTTGGAATCGAAGGCGGTGGCGTGGTTGATGGACAAGCGGAGAAATTCGTAGTGAGATATGATCCGAGGAAGAATATAATGGTGAGCTGGAATCAAAGTGGGGCTTGCTTGGGTGATGAATGTAGGCCTAGACTTATCGGTTTCCTTGGCTGCCGTAACGTTAGTCTCTCCAACATTACTCTCAACCAACCTGCTTATTGGTGCTTACACTTGGTACGGAGTGAAAACATATCAATTAAGGACATAGCAATATATGGAGACTTGAATATACCAAACAATGATGGGATTGACATTGAGGACTCAAACAACACTGTAATCACTGGATGCCACATTGATACAGGGGATGATGCTATCTGTCCAAAGTCATCCACTGGCCCTGTATACAATCTAACTGTCACCAACTGTTGGATTCGGTCCAAATCTTCTGCAATCAAATTCGGCAGTGCTAGTTGGTTTGATTTCAAGCATTTTGTGTTTGATAATATCACTATTGTTGATTCCCACAGAGGGCTTGCATTCCAGATCCGTGATGGAGGAAATGTAAGTGACATAGTTTTCTCAAACATAAATATAAGCACAAGATACTATGACCCATTATGGTGGGGAAGAGCAGAGCCTATTTATGTCACAACTTGTCCACGAGACTCAACCTCAAAGGAGGCTTCAATCTCAAATGTTCATTTCATCAACATCACAGCAAACTCTGAAAATGGAATCTTCCTCTCTGGTTCAAAGAGAGGATTGTTGAGAAATTTGAGCTTCATCAACATGAATATCACTTACAGAAGGTTCACTAGTTATGCTGGTGGGTTGTTTGACTATAGACCAGGATGCCAAGAATTGGTTAAACACAAGACTGCGGGGATGATGATGGAGCACATTGAAGGTCTTGAGGTTAGAAATGTAGAAATGAGATGGGAAAATAATGAACTAGAGGATTGGAATAATCCTATGGAGTTTAGACCATCTACTGTGAATAATATCTATTTCTCTAATTTTAATTCTGTTTTGTATTCAAATAGCAAATCAAGTTAA 1395 0.4452 MDKSPLLFFQITLFLLIQSLLATSHPIPVTVSVTDFGAAGDGIRYDTSSIQSAIDSCPSSVPCRVIFPAPGKYLTATVFLRSGVVLNVETGATILGGARLEDYPKESSRWYVVLAENATDVGIEGGGVVDGQAEKFVVRYDPRKNIMVSWNQSGACLGDECRPRLIGFLGCRNVSLSNITLNQPAYWCLHLVRSENISIKDIAIYGDLNIPNNDGIDIEDSNNTVITGCHIDTGDDAICPKSSTGPVYNLTVTNCWIRSKSSAIKFGSASWFDFKHFVFDNITIVDSHRGLAFQIRDGGNVSDIVFSNINISTRYYDPLWWGRAEPIYVTTCPRDSTSKEASISNVHFINITANSENGIFLSGSKRGLLRNLSFINMNITYRRFTSYAGGLFDYRPGCQELVKHKTAGMMMEHIEGLEVRNVEMRWENNELEDWNNPMEFRPSTVNNIYFSNFNSVLYSNSKSS 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02138 464 PANTHER PECTIN LYASE-RELATED 22 457 - -
Car03g02138 464 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 22 457 - -
Car03g02138 464 Pfam Glycosyl hydrolases family 28 57 381 IPR000743 GO:0004650|GO:0005975
Car03g02138 464 SUPERFAMILY Pectin lyase-like 13 379 IPR011050 -
Car03g02138 464 SMART pbh1 301 323 IPR006626 -
Car03g02138 464 SMART pbh1 194 220 IPR006626 -
Car03g02138 464 SMART pbh1 338 363 IPR006626 -
Car03g02138 464 SMART pbh1 221 242 IPR006626 -
Car03g02138 464 SMART pbh1 247 268 IPR006626 -
Car03g02138 464 Gene3D - 17 389 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02138 Car-Chr3 67612785 67616263 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02138 29 459 Glycoside Hydrolase AT3G57790 67.574 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02138 - - mtr:MTR_7g092470 827.78