Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02122 ATGGTCGATCCTCAAGTTGAAGTTCCCCTGAAGTTGTTGAATGAACAACCTTTGTACAGAAAAATCTGCAACACCCTCCTCTCTCTAACCTACTCTCGTTCCCTCCCCAAAGGCCTCCAACTCCACGCTCACATTCTCAAACTAGGCTTACAAACAATCCCTCTTCTCTCCCACCACCTCATCAACTTCTACTCCAAAACTCATCTCCCTTATTCTTCCCTTCAAATCTTCAATGATTCCCCTCACAAATCACCCACCACTTGGAGTTCCCTAATCTCCTCCTTCGCACAAAATGACCTCCCTACCCTCTCCCTCCACTTCTTCCGTCTTATGCTCCGTCATGGCCTCCCCCCTGACGACCATATCTTCCCCAGCGCCACCAAATCATGTGCCATTCTTTCCCACTTCCCCGTTGCAATGTCCCTCCATTGCTTTGCCATCAAAACCGCTTACCATCTTGACCTCTTTGTGGGAAGCTCCATTGTTGATATGTATGCTAAATGTGCTCATATTAATTATGCGCGTAACGTGTTCGATGAAATGCCCCACAGAAATGTTGTTTCTTGGAGTGGGTTGATTTATGGCTATGTTCAATTGGGTGAGGATGATGAAGCTTTGAGGCTTTTTAAACGCTTTCTCGTTGAAGGAAACGAGGGTGTTAATGATTTTACATTGTCAAGTGTTTTAAGGGTTTGTAGTGGTTCCACTTTGCTTCAGATGGGGAAGTTAATACATGGGTTGAGTTTTAAGACTAGTTTTGATTCGTCCTGCTTTGTGGCCAGTTCTTTGATTTCTTTGTATTCTAAATGTGGGGTTGTTGAAGAAGCTTATGACGTTTTTGAGGAGGTTACTGTTAGGAACCTTGGCATGTGGAATGCCATGTTGATTGCTTGTGCTCAACATGCACACACGAATAAAACGTTTGAGTTGTTTGAAATGATGAACAGTGTTGGTGGTGTGAAGGCTAATTTCATTACTTTTTTGTGTGTGCTTTATGCATGTAGTCATGCTGGGTTGATAGAGAAGGGTAAGCATTATTTTGAGTTGATGAAGGATTATGGTATTGAACCTGAGACTCAACATTATGCTACCATGGTTGATTTGCTTGGCCGTGCTGGCAAGTTAAAGGATGCTGTTAAGGTGATTGAGGAAATGCCAATGGAACCTACTGAATCTGTTTGGGGAGCTTTGTTAACTGGGTGTAGAATACATGGGAATACTGAATTGGCTTCTTATGTTGCTGATAGGGTTTCTGAGATGGGTTCTGTGAGTTCAGGACTTCATGTTCTGCTTTCTAATGCTTATGCTGCTGCTGGGAGATGGGAGGAAGCGGCGAAAGCGAGGAAGATGTTGAGGGATACAGGAATAAAGAAGGAAACAGGGTTGAGTTGGGTGGAGGAAGGGAATAGAGTTCACACATTTGCGGCTGGGGATAGATCTCATGCGAAGACAGTGGAAATTTATGACAAGTTAGAGGAATTGGGAGAAGAAATGGCTAAAGCAGGATATGTTGCTGATACTTCTTTCGTGTTGAAAGAAGTGGATGGTGAGGAGAAGAGTAGAAGTATAAGGTATCATAGTGAGAGATTAGCTATTGCATTTGGACTTATTACGTTCCCTCACGGACAACCTATAAGAGTGATGAAGAATTTGCGAGTTTGTGGTGATTGTCACACTGCCATCAAGTTTATTAGTAAATGTACAGGAAGAGTCATCATTGTGAGGGACAATAATCGGTTCCATCGATTTGAGGATGGAAAATGTACTTGTGGAGATTATTGGTGA 1785 0.4297 MVDPQVEVPLKLLNEQPLYRKICNTLLSLTYSRSLPKGLQLHAHILKLGLQTIPLLSHHLINFYSKTHLPYSSLQIFNDSPHKSPTTWSSLISSFAQNDLPTLSLHFFRLMLRHGLPPDDHIFPSATKSCAILSHFPVAMSLHCFAIKTAYHLDLFVGSSIVDMYAKCAHINYARNVFDEMPHRNVVSWSGLIYGYVQLGEDDEALRLFKRFLVEGNEGVNDFTLSSVLRVCSGSTLLQMGKLIHGLSFKTSFDSSCFVASSLISLYSKCGVVEEAYDVFEEVTVRNLGMWNAMLIACAQHAHTNKTFELFEMMNSVGGVKANFITFLCVLYACSHAGLIEKGKHYFELMKDYGIEPETQHYATMVDLLGRAGKLKDAVKVIEEMPMEPTESVWGALLTGCRIHGNTELASYVADRVSEMGSVSSGLHVLLSNAYAAAGRWEEAAKARKMLRDTGIKKETGLSWVEEGNRVHTFAAGDRSHAKTVEIYDKLEELGEEMAKAGYVADTSFVLKEVDGEEKSRSIRYHSERLAIAFGLITFPHGQPIRVMKNLRVCGDCHTAIKFISKCTGRVIIVRDNNRFHRFEDGKCTCGDYW 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02122 594 Pfam DYW family of nucleic acid deaminases 502 594 IPR032867 GO:0008270
Car03g02122 594 Gene3D Tetratricopeptide repeat domain 238 336 IPR011990 GO:0005515
Car03g02122 594 Gene3D Tetratricopeptide repeat domain 136 237 IPR011990 GO:0005515
Car03g02122 594 Pfam E motif 404 466 IPR046848 -
Car03g02122 594 Pfam E+ motif 471 498 IPR046849 -
Car03g02122 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
Car03g02122 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 84 118 IPR002885 -
Car03g02122 594 Pfam PPR repeat 187 216 IPR002885 -
Car03g02122 594 Pfam PPR repeat 261 285 IPR002885 -
Car03g02122 594 Pfam PPR repeat 87 116 IPR002885 -
Car03g02122 594 Pfam PPR repeat 290 316 IPR002885 -
Car03g02122 594 Pfam PPR repeat 354 385 IPR002885 -
Car03g02122 594 Gene3D Tetratricopeptide repeat domain 14 135 IPR011990 GO:0005515
Car03g02122 594 TIGRFAM PPR: pentatricopeptide repeat domain 187 216 IPR002885 -
Car03g02122 594 TIGRFAM PPR: pentatricopeptide repeat domain 362 385 IPR002885 -
Car03g02122 594 TIGRFAM PPR: pentatricopeptide repeat domain 325 357 IPR002885 -
Car03g02122 594 TIGRFAM PPR: pentatricopeptide repeat domain 87 119 IPR002885 -
Car03g02122 594 Gene3D Tetratricopeptide repeat domain 339 531 IPR011990 GO:0005515
Car03g02122 594 PANTHER BNAA10G28390D PROTEIN 19 537 - -
Car03g02122 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Car03g02122 594 PANTHER OS01G0913400 PROTEIN-RELATED 19 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02122 Car-Chr3 67462432 67464216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02122 34 594 Glycoside Hydrolase AT3G49170 36.252 6.65e-121 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02122 - - lang:109356914 941.028