Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02021 ATGGTTAAAACTTCGCTATTTCTGACAATAAAATCTCTACGCGACTTGCACGTGTTAGTTGGTTCCGTTCCACGACCAGCGTGTCTTGTAGCATCCACTGAAGAAACAGCGGTAAATATTTTCAATCACACATTGAGTTGTAAAGTTCACTCTTCAAATATAATTTGCAAGAACCAATGGGTTACAAATGTATTCAGTGTGGTTTTACCATCAAAACACTTTATCTTCAGTATTCACCGGGATAATTGCAAGGCTGTGGCAGATGAATACATAGAATGTGAATTCATGATTATTGTAATAGATTTAATACTTCACAAGCCCAAGGCCTATAGACATCTACTTTACAATGTCATCAATCAAGAAACTTTGAAGTTTCAGGGACTACTCTGGAAATTGGCTTCCATTTTTCTTCTTTTTGATGCTTACAAGTGTTTGATCTTGGAATACAGCAAGGGTAAATTGGGTTCATCAATGAGCTACTCCTCACTAGTGTCATTGTGTTGCAAGATGTTGATGGATGTCTTCCTTGGGAACTTTATGTTTCTTTTAACTTTCTTCTTTATGGTCAAGATATTTCTCCATATATCAATCGGTGTCTCCAGGTGCAATGACATTTTGCTTGGTCTCCTGATTTCATGTTACTTCAAGATTTTTCTTATTGCAATGATGGTCTGGGAATTTCCATCATCTGTGGTATTCATAATTGAATTATTTTGCTTTTCATCTAATGCGGTAGCATTAAAAGTGATGACGGAATCAAGTATGAGTCGATGTGTATGGACATGCTTCAGTGCATATGCTATCAAGCTTTTTATCACTCAGGCACCTGAGCTCATATTGTTGGGGAAATTAATGCAAGGCTGGATCGACAATTGCTCCGCCGCGTGGAATCCTACACGTCCCTGCCGCTGCATCCAAACCGCTGAAATCATGAATAACATTGCTGGGAGACCACTTAATGGAGTCGTAGTAgaagatgatgatgaagatgaggctaatggtgatgGCCTTGAAGCCTGGGAGAGAGCTTATACAGAAGATAGATCTTGGGAGTCTTTGCAGGAGGATGAATCTGGACTTCTTCGCCCCATAGATACTACTGCCATTCACCATGCCCAGTATCGCAGGCGCCTTCGTGCTCTTGCTGCAACAGCAGCTACTGCACGAATTCAGAAGGGTTTGATACGATACATGTACATTGTTGTAGACCTGTCCAAGGCAGCTTCAGAGAGGGACTTTCGGCCAAGTAGGATGGCTGTGATCGCGAAGCAGGTTGAGGCATTTATCAGGGAGTTCTTTGATCAGAATCCACTAAGTCATGTTGGTTTGGTCACTACAAAAGATGGGGTTGCTCAAAGCTTGACAGATCTTGGTGGCAGTCCTGAGTCCCACATCAAAGCTTTGATGGGTAAACTAGAATGCTCAGGTGATGCCTCCCTACAAAACGCTCTAGATCTTGTTCATGACAATCTAAATCAAATCCCATCATATGGTCATCGAGAAGTTCTGATTTTATATTCGGCCCTCAGTACATGCGATCCTGGTGATCTCATGGAAACTATCCAGAAATGCAAAAAGAGTAAAATAAGATGCTCTGTCATTGGTCTTGCAGCTGAAATGTTTATATGCAAGCATCTTTGCCAAGAAACTGGAGGAACGTATTCAGTTGCACTAGATGAGTCCCACTTTAAAGAGTTAATTCTAGAGCATGCTCCACCACCTCCAGCAATAGCAGAGTACGCTACTGCTAATTTAATTAAGATGGGTTTCCCGCAAAGAGCAGCTGAGGGTTCTGTTGCAATTTGTACATGTCATGAGGAGGCAAAGACCGGAGGGGGATATACTTGTCCAAGATGCAAAGTTCGTGTCTGTGAGCTTCCTACAGAATGCCGCATTTGTGGATTGACCCTTATTTCTTCGCCCCATTTGGCAAGGTCGTATCATCATCTCTTCCCTATAGTGCCGTTTGTTGAGATCTCTCCATCGTCTCAAAATGATCCAAGCCACAATTTTCCCAATATTTGTTTTGGTTGTCAAGAAAGTCTTCTTAGTCATGGAAACAAGCCTGAACTTTCTGTCTCTTGTCCAAAATGCAAACAACAATTCTGTCTTGATTGCGACATCTACATTCACGAGAGCTTACATAATTGCCCAGGCTGTGAGAGTTTCAGGCATTCTAAGTCAGTTACTATTGCCTAA 2199 0.4106 MVKTSLFLTIKSLRDLHVLVGSVPRPACLVASTEETAVNIFNHTLSCKVHSSNIICKNQWVTNVFSVVLPSKHFIFSIHRDNCKAVADEYIECEFMIIVIDLILHKPKAYRHLLYNVINQETLKFQGLLWKLASIFLLFDAYKCLILEYSKGKLGSSMSYSSLVSLCCKMLMDVFLGNFMFLLTFFFMVKIFLHISIGVSRCNDILLGLLISCYFKIFLIAMMVWEFPSSVVFIIELFCFSSNAVALKVMTESSMSRCVWTCFSAYAIKLFITQAPELILLGKLMQGWIDNCSAAWNPTRPCRCIQTAEIMNNIAGRPLNGVVVEDDDEDEANGDGLEAWERAYTEDRSWESLQEDESGLLRPIDTTAIHHAQYRRRLRALAATAATARIQKGLIRYMYIVVDLSKAASERDFRPSRMAVIAKQVEAFIREFFDQNPLSHVGLVTTKDGVAQSLTDLGGSPESHIKALMGKLECSGDASLQNALDLVHDNLNQIPSYGHREVLILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETGGTYSVALDESHFKELILEHAPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRICGLTLISSPHLARSYHHLFPIVPFVEISPSSQNDPSHNFPNICFGCQESLLSHGNKPELSVSCPKCKQQFCLDCDIYIHESLHNCPGCESFRHSKSVTIA 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02021 732 Gene3D von Willebrand factor, type A domain 391 576 IPR036465 -
Car03g02021 732 Pfam Arv1-like family 81 247 IPR007290 GO:0032366
Car03g02021 732 ProSiteProfiles VWFA domain profile. 397 536 IPR002035 -
Car03g02021 732 SMART C1_4_2 674 722 IPR004595 GO:0006281|GO:0008270
Car03g02021 732 CDD vWA_transcription_factor_IIH_type 393 575 IPR007198 -
Car03g02021 732 SMART VWA_4 395 571 IPR002035 -
Car03g02021 732 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 651 729 IPR013083 -
Car03g02021 732 SUPERFAMILY Cysteine-rich domain 648 721 IPR046349 -
Car03g02021 732 TIGRFAM ssl1: transcription factor ssl1 613 722 IPR012170 GO:0000439|GO:0006289|GO:0006351
Car03g02021 732 Pfam TFIIH C1-like domain 675 722 IPR004595 GO:0006281|GO:0008270
Car03g02021 732 PANTHER GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 330 720 - -
Car03g02021 732 Pfam Ssl1-like 401 591 IPR007198 -
Car03g02021 732 SUPERFAMILY vWA-like 394 559 IPR036465 -
Car03g02021 732 ProSitePatterns Zinc finger C2H2 type domain signature. 695 715 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02021 Car-Chr3 66383567 66396327 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02021 K03142 - gmx:100803090 756.518