Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01998 ATGGCTGCAGAGGTTTCGATGTGTTGCACCAGCACTTCTCACCTCACTCCAGATGAGGAGAGAATCATGATCAGAGACATTGCTCTTGCTTCTCAAGCTAATACCAAAGAAGGCGATACCTTCTTCATGATCACTCAGAGATGGTGGCAACATTGGATTGAATATGTGAACCAAGACCATACGAACCCTTCTTATGATGGATCTTCCTTTCCTGAACATTGCGATTTGTCCAGTTCTAGTGCTTTAAAGAGGCCAGCTGGTATTGATAATTATGATTTGATAGATAATACTGGATCAGAGGACTCTAGTGCGGTGGGTATTGAAATTCATGATACACTTTTAGAAGGCCGTGACTATGTATTACTTCCCCAAGAGGTTTGGAATCAATTATTTACATGGTATGGTGGTGGACCTACATTGGCAAGGAAAGTTATCAGTTCAGGTCTTTCCCAGACAGAATTTGCAGTAGAGGTGTATCCTTTACGGCTTCAATTACTTGTGTTGCCAAAAAATGATCGATCCACTATAAGAATAAGCAAGAAGGAAACCATTGGACAGCTACACTTAAAGGCTTGTGAAATATTCGATCTTCATTTAGACCAAGTGCGCATTTGGGATTATTATGGCCATCGGAAGCATGCCTTGATGAATGACATGGACAAAACTCTAGATGATGTCAACCTACAAATGGACCAAGATATTCTAGTTGAGGTCATAAACAATACAAATAGCGCAAGTTCTGCTCAAGAAAATGGATCAGCGCAGAGGGAAGCGAATCCTGTTCTTGTGGAGTCTTCAAAATCAAGCTTATCAGGTGCTTGTGGCCTGTCTGCGAGCAAGGGTGCATCTAGAGGCAACAATAATGAACTTTCTTCATCTCAGAAACTAAACTCTCCGGTCAGAGACTTGGAAAACCCTTATGGAACTATTGGTGTCACCACAAGAGGTTCATTTGGTGGTCTCACTGGGTTGCTGAATCTTGGCAATACTTGTTTCATGAATAGTGCAATACAATGTCTTGTTCATACACCAGAATTTGCTAGGTACTTTAGGGAGGACTATCATCGAGAGATAAATTGGCAAAATCCACTCGGCATGGTTGGCGAACTAGCCCTAGCATTTGGTGAGTTGCTTCGTAAACTGTGGGCACCTGGGCGAACACCAATTGCTCCTCGGCCTTTTAAATCAAAGCTTGCTCGCTTTGCACCTCAGTTCAGCGGGCACAATCAACATGATTCTCAGGAGCTTTTAGCATTTCTGCTGGATGGGCTCCATGAAGACTTAAATCGTGTAAAGCACAAACCATATATAAAGTCCCGGGATGCTGATGGCCGACCTGATGAAGAAGTGGCCGATGAATATTGGGCAAATCATATTGCTCGTAATGATTCCATAATTGTTGATGTGTGCCAGGGACAATACAAGTCAACTTTGGTATGTCCAGTTTGCAACAAAGTCTCTGTCACATTTGATCCTTTTATGTACCTTTCCCTTCCTCTCCAGTCCACCACCAGTAGAACCATGACAGTGACAGTTTTTAGTTGTGACGGTACCACCCTACCATCTCCGTGTACAGTAACTGTGACCAAGCAGGGACGATGCAGAGATCTTATACAGGCACTTAGCAATGCTTGCTCATTGAAGCCTAACGAGAAGCTATTGCTTGTAGAGATACGAAACCATTTGATCCATAGATTTTTTGAAGATCCTCTTCTATTGTTATCCTCAATTAAAGATGACGACCGCCTTGCGGCTTACAAGATTCCAAAGATCGACAAAAACACAAAGTACCTCCAGCTGATACATCGCCGTAGAGAGCAGAGTAGTGACTCGCAGACGATTTCAGGATGGAAACCATATGGAACACCTATTGTTTCATTGATCTCATCTGATGATACAATCACAAGAGGTGATATTCAAGTAATAGTTAATCGCATACTCTCTCCTCTTCTATTGAAAGGCGGCAATGCACAACACGCCGCTTCTGCTGAAACCAGCAACCTGAATTTGGCGTCAAATTCTATAAATAAGGACGATAGTGTTTCGAAGGCAAAACACCTACCAACATTACCTCTACTATTGGTAGATGATAACAATGCTTGCATTGATCTTTCAATGGGAGAGGAGAAAGTAGTTAAACTGTCACCATCATCGGCAACAGTTTTAGTATATATTGATTGGTCTCAGAAGCTTCTGGAGAAGTATGATACCCATCCACTTGAGACTTTGCCAGAAGTATTGAAATGTGGGCCTGTAACCAAGAAAGCTCGTATTGAACCTCTCTCGTTGTACACTTGTTTGGAAGCTTTTCTGCGCGAAGAACCTTTGGTGCCTGAAGATATGTGGTACTGTCCTAAATGCAAAGAGAGACGACAAGCAAGCAAAAAGCTTGATTTATGGAGGCTTCCGGAGGTTTTGGTCATTCATTTAAAGAGGTTCTCATACAGCAGGTCAATGAAGCATAAACTAGAGACTTTTGTAAACTTTCCAATTCATGATTTTGATTTAACAAATTACATAGCCAACAAAAACAACCCGCGGCGGCAACTGTATGAACTCTACGCCCTTACAAATCACTATGGTAGTATGGGTAGTGGCCATTATACTGCACATATTAAGATTATAGAAGAAAACAGATGGTACAACTTTGATGATAGCCACATATCACTCATAAGTGAAGATGAGGTAAATACTGCCGCCGCCTATGTTCTATTTTACCGGAGGGTGAAAACTGACGATGCTGTGGTAAGCAATGGGGCTTAG 2763 0.4209 MAAEVSMCCTSTSHLTPDEERIMIRDIALASQANTKEGDTFFMITQRWWQHWIEYVNQDHTNPSYDGSSFPEHCDLSSSSALKRPAGIDNYDLIDNTGSEDSSAVGIEIHDTLLEGRDYVLLPQEVWNQLFTWYGGGPTLARKVISSGLSQTEFAVEVYPLRLQLLVLPKNDRSTIRISKKETIGQLHLKACEIFDLHLDQVRIWDYYGHRKHALMNDMDKTLDDVNLQMDQDILVEVINNTNSASSAQENGSAQREANPVLVESSKSSLSGACGLSASKGASRGNNNELSSSQKLNSPVRDLENPYGTIGVTTRGSFGGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYHREINWQNPLGMVGELALAFGELLRKLWAPGRTPIAPRPFKSKLARFAPQFSGHNQHDSQELLAFLLDGLHEDLNRVKHKPYIKSRDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQSTTSRTMTVTVFSCDGTTLPSPCTVTVTKQGRCRDLIQALSNACSLKPNEKLLLVEIRNHLIHRFFEDPLLLLSSIKDDDRLAAYKIPKIDKNTKYLQLIHRRREQSSDSQTISGWKPYGTPIVSLISSDDTITRGDIQVIVNRILSPLLLKGGNAQHAASAETSNLNLASNSINKDDSVSKAKHLPTLPLLLVDDNNACIDLSMGEEKVVKLSPSSATVLVYIDWSQKLLEKYDTHPLETLPEVLKCGPVTKKARIEPLSLYTCLEAFLREEPLVPEDMWYCPKCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFDLTNYIANKNNPRRQLYELYALTNHYGSMGSGHYTAHIKIIEENRWYNFDDSHISLISEDEVNTAAAYVLFYRRVKTDDAVVSNGA 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01998 920 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5 13 919 - -
Car03g01998 920 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 13 919 - -
Car03g01998 920 CDD Peptidase_C19R 751 907 - -
Car03g01998 920 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 323 338 IPR018200 GO:0004843|GO:0006511
Car03g01998 920 Pfam Ubiquitin carboxyl-terminal hydrolase 322 906 IPR001394 GO:0004843|GO:0016579
Car03g01998 920 Gene3D - 159 247 - -
Car03g01998 920 Gene3D - 7 158 IPR035927 -
Car03g01998 920 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 322 909 IPR028889 -
Car03g01998 920 SUPERFAMILY Ubiquitin-like 163 238 IPR029071 -
Car03g01998 920 Gene3D Cysteine proteinases 313 546 - -
Car03g01998 920 MobiDBLite consensus disorder prediction 279 300 - -
Car03g01998 920 ProSiteProfiles DUSP domain profile. 15 145 IPR006615 GO:0004843
Car03g01998 920 SMART dusp 34 148 IPR006615 GO:0004843
Car03g01998 920 SUPERFAMILY DUSP-like 14 145 IPR035927 -
Car03g01998 920 MobiDBLite consensus disorder prediction 279 302 - -
Car03g01998 920 SUPERFAMILY Cysteine proteinases 320 909 IPR038765 -
Car03g01998 920 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 851 868 IPR018200 GO:0004843|GO:0006511
Car03g01998 920 Gene3D Cysteine proteinases 716 916 - -
Car03g01998 920 Pfam DUSP domain 38 145 IPR006615 GO:0004843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01998 Car-Chr3 66055783 66064182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01998 762 911 Miscellaneous Gene Families AT4G31670 33.987 9.78e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01998 - - mtr:MTR_7g088760 1648.25