Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01986 ATGACATTGAGGAAGAAGAGGAGCAGGATGAAGAAGAGAGAGCAGAGAGTGATGAAGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCagaagaagaagaagaggaagaaaaaGGAGGAGTATGTCCTTGATGAGGATGATTACGAGTTGCTGGAGGACAATAATATCAATATTCATCGTCGAAAGGAGAGCAAAAAGTTCAAGCGACTGAAAAAGGGCCAGAGGGATACTGAGGAGGGGCACTATGGACAATCTGATGAAGAGGAGTTTTTTGGAAGTGGTAAAGTTGGGCGAACTGCTGAGGAGAAGCTTAAACGCAGTTTATTTGGCGATGATGAAGGAACTCATCTCGAAGACATTGCTGAAGAGGAGGATCAAGGAGAAGAAGAGGAAGATGCTGACATTGGAGAAGAAGATGAAATGGCCGACTTCATTGTGGATGAAGAAGAAGTTGATGAGAACGGAGCTCCTGTGAGGTACAAGAAGCCGAAGGGGGTCAAAAGGCCTAGGCAGGCACCAGGAGTCTCGTCCTCAGCTTTACAAGAAGCTCAAGAATTATTTGGCGATGTTGATGAGTTGCTTGAGGCTCGCAATCAAAGTCGAGAATTGAATGACTATAGAGAGACTAGACTTGAAGATGAATTTGAGCCTATTGTTCTCGCTGAGAAATATATGACACCGAAGGATGACCGGATTAGGGAGCTCGATATTCCAGAGAGAATGCAGATAACGGAGGAGAGTACTGGTGCCCCTTCACTGGATGGTAGTATAGATGAAGAGAGTCAGTGGATAGTTAGTCAACTTAAAAATGGAGCAGTTCCTTGGATTCGCAAGAAAGATTCAAGCTCCCAAAATAATGCGGAGGAGCTACCAATTGACAAGGATGATATCGTCAGATTTTTGGAACTGTATCATGTGCAAAAATTAGATATTCCTTTTATTTCCATGTACCGAAAGGAAGAGTGTTTAAGCTTATTGAAAGACCTTGAGCGGCCTGAAGCTGGTGACGAGACTTGGGATAAGAATAACAAGACACCTACTCTAAAATGGCACAAGATACTGTGGGCTCTACAGGACCTGGACAGGAAGTGGTTACTTCTTCAGAAGCGGAAGAGTGCCCTCCAATTATACTACAATAAACGGTTTGAAGAAGAGTCTCGTCGCGTCTATGATGAAACAAGACTAAACTTGAATAGGCAATTGTTTGAATCAGTTATGAGATCACTGAAGGAGGCAGAATCAGAGAGGGAGGTTGATGATGTTGACTCCAAATTCAACTTGCATTTCCCACCAGGTGAAGCTGGTGTTGATGAAGGACAATACAAAAGGCCAAAACGGAAGTCAATGTATAGCTCTTTCAGCAAGGCAGGTCTGTGGGAGGTTGCAAGCAGGTTTGGGTGTAGTTCTGAGCAACTCGGATTATGTCTATCTCTAGTTCAGCTGCAAGAATTGGAAGATCCAAAGGAAACACCAGAAGAGGTGGCTTCTAACTTCACATGTGCTATGTATGATACTCCTGAAGAAGTACTTAAGTGTGCTAGACACATGGCAGCTGTTGAGATAAGTTGTGAGCCTAGCATAAAGAAACATGTTAGAAGTCACTTTATTGACCATGCTGTGGTGTCAACCTGCCCTACTGCTGATGGAAATATAACCATAGATTCGTTCCATCAGTTTTTTGGGGTGAAGTGGCTGCGAGAGAAGCCTTTGTCTAAATTTGAGGATGCCCAATGGCTCCTTATACAGAAGGCAGAAGAGGAAAAACTCATTCAAGTTACTATTAAGCTTCCTGAAGAGTATCTAAATAAATTAATAGACCAATTCAATGAGTATTACGTTAGTGATAGTGTTAGCAGATCTGCTCAACTGTGGAATGAACAGAGGAAGCTGATATTGCATGATGCAATCTTTCGATTTCTTTTACCATCAATGGAAAAAGAAGCAAGAGGCGTCTTAGCAAGCAAAGCAAAGCATTGGTTACTTATGGAGTATGGAAAGGCCTTGTGGAGTAAGGTTTCTGTGGGGCCTTATCAACAGAAGGAAAATGATCTAAGCTCAGATGATGAGGCTGCTCCTAGGGTTATGGCCTGCTCTTGGGGCCCTGGAAAGCCACAAACAACTTTTGTTATGTTAGATTCATCTGGAGAAGTGCAAGATGTGCTATACACTGGGTCACTTACTTTAAGGTCACAAAGCGCCAGTGACCAACAAAGGAAGAAGAATGACCAGGAACGTGTGTTGAAGTTTATGACAGATCACCAACCACATGTTGTTGTTTTAGGAGCAGTTAACTTGTCTTGCACTCGTTTGAAGGAAGATATATACGAGGTTATTTTCAAGATGGTCGAGGAAAACCCTAGAGATGTTGGGCATGAAATGGATGGGCTCAGCATTGTTTATGGGGATGAATCTTTGCCTCGTCTTTATGAAAATTCTCGAATTTCCTCTGAACAGCTTCCTTCACAGCAGCTAGGTATTGTGAGGCGGGCTGTTGCGCTTGGTCGATATCTCCAGAACCCATTGGCAATGGTTGCGACATTGTGTGGACCCAGAAAGGAAATACTATCATGGAAACTGAGCCCTTTGGAGAGTTTTCTCAACCCAGATGATAAATTTGGGATGGTTGAGCAGGTTATGGTAGATGTGACCAATCAGGTCGGCTTAGACATCAATTTAGCAATAAGTCATGAATGGTTATTTGCTCCATTACAATTTATTTCGGGGCTTGGTCCACGGAAAGCTGCGTTCTTGCAGAGATCGCTGGTAAGAGCTGGTGCAATTTTTACTCGGAAAGATTTTTTGACTGAACATAAACTTGGTAAAAAAGTGTTTGTCAACGCGGTTGGTTTCTTGCGTGTCCGGCGAAGTGGATTGGCCGCTAGCAGCAGCCAATTTATTGATTTGCTGGATGATACACGAATTCATCCAGAATCTTATATTCTTGCCCAGGAGTTGGCCAAAGATGTGTATGAGGAAGATGGCACAGGTGATGCAAATGATGATGATGATGCACTGGAGATGGCCATAGAACATGTCAGAGATCGACCTAGTTATTTGAAAAACCTGGATGTTGAGGAATATGCTGCTGGCAAAGAGCGTCAAGACAAAATTGAAACTTTCTATGATATAAAAAGAGAATTGATTCAAGGTTTTCAGGATTGGCGTAAGCAATATGAAGAACCAAGTCAGGATGAGGAGTTTTATATGATTTCCGGTGAGACTGAAGAGACTCTTGCTGAAGGTAAAATGGTCCAAGTAACAGTTCGCAGACTGCAAGCCCAAAAGGCAATATGTGGGCTTGAATCAGGAATGACTGGAATCCTTATGAAAGAAGACTATACTGATGACTGGAGAGATATAATAGAATTATCTGATAGGCTACATGAAGGTGACATGCTCACTTGTAAAATCAAGTCAATCCAAAAGAACAGGTATCAAGTCTTCCTTGTTTGTAAAGATAGTGAAATGAGACGTGATCGGTTGCAGAACAACCATGATCTTGATCCATATTACCACGAAGATCGGAGCTGCTTACAGAGTGAGCAAGACAAAACTCGGAAAGAAAAGGAGCTTGCAAAGAAGCATTTCAAGCCAAGGATGATTGTTCATCCACGCTTTCAGAACATAACTGCAGATGAAGCAATGGAGTATTTGTCGGACAAGGATCCTGGAGAAAGTATTTTCCGTCCTAGTTCCCGTGGTCCTTCATACCTTACTTTGACTCTTAAAATTCACGATGGAGTATATGCCCACAAGGATATAGTTGAAGGTGGGAAGGAAAAAAAGGACATCGCAAGCTTACTTCGAATCGGAAAGACACTAAAAATTGGAGAGGACACTTTTGAAGATTTAGATGAGGTTATGGATCGTTATGTTGATCCCTTGGTGACTCACTTAAAAACAATGTTAAACTATCGCAAGTTCAAGAAGGGTTCAAAAACAGAAGTTGATGAACTTTTGAGGATTGAAAAGGCTGAGTATCCCATGCGCATAGTCTATAGTTTTGGCATCTCTCATGAACATCCTGGCACATTTATATTGACTTTTATAAGAAGTACAAATCCTCACCACGAGTACATTGGTCTTTACCCCAAAGGATTCAGGTTCCGCAAAAAGATGTTTGAGGATATTGACCGGCTTGTGTCATATTTTCAAAGGCACATTGACGATCCACAAAATGATTCAACACCTTCCATTAGATCTGTAGCTGCAATGGTACCAATGCGAAGCCCTGCAACTGGTGGCTCATCAGGGGCATCTGTGGGTAGTGGCTGGGGTGGTTCAAACAGCGAGGGTGGCTGGAGAGGTCACTCGCATGATAGAGATCGATCTTCTACTCCTGGTTCCAGGACAGGACGGTCTGATTACAGAAACAATGGGAATCGAGATGAACACCCTAGTGGAGTGCCTCGTCCTTATGGTGGTGGACGAGGCCGTGGTCGTGGTTCTTATAACAATAGCAGTAGAGGACACAACTCAAACAGTGAAAGGCAGGACTCTGGTTACGGTACAACCAGATGGGGATCCGCCCCGAAAGATGGGGATGATGGTTTAAGCAATTTTCCAGGGGCTAAGGTTCAAAATTCCCCTGGAAGGGAAGCATTTCCTGGTGGTTGGGGTGGAGGGGGAGCTAGTACTAGTGACAGCAACGCTGGCTGGGGACGTGGGAGTGGTGGTGCTGGTCCGAGCGATGCTGAACATGGAAACTCTGGATGGGGAACTGGATCCAAGAGAAATTCCGACAATGGGTGGTCTGGTGGAAGCTCTGGTCGGTGA 4785 0.4309 MTLRKKRSRMKKREQRVMKSXXXXXXXXXXXRQKKKKRKKKEEYVLDEDDYELLEDNNINIHRRKESKKFKRLKKGQRDTEEGHYGQSDEEEFFGSGKVGRTAEEKLKRSLFGDDEGTHLEDIAEEEDQGEEEEDADIGEEDEMADFIVDEEEVDENGAPVRYKKPKGVKRPRQAPGVSSSALQEAQELFGDVDELLEARNQSRELNDYRETRLEDEFEPIVLAEKYMTPKDDRIRELDIPERMQITEESTGAPSLDGSIDEESQWIVSQLKNGAVPWIRKKDSSSQNNAEELPIDKDDIVRFLELYHVQKLDIPFISMYRKEECLSLLKDLERPEAGDETWDKNNKTPTLKWHKILWALQDLDRKWLLLQKRKSALQLYYNKRFEEESRRVYDETRLNLNRQLFESVMRSLKEAESEREVDDVDSKFNLHFPPGEAGVDEGQYKRPKRKSMYSSFSKAGLWEVASRFGCSSEQLGLCLSLVQLQELEDPKETPEEVASNFTCAMYDTPEEVLKCARHMAAVEISCEPSIKKHVRSHFIDHAVVSTCPTADGNITIDSFHQFFGVKWLREKPLSKFEDAQWLLIQKAEEEKLIQVTIKLPEEYLNKLIDQFNEYYVSDSVSRSAQLWNEQRKLILHDAIFRFLLPSMEKEARGVLASKAKHWLLMEYGKALWSKVSVGPYQQKENDLSSDDEAAPRVMACSWGPGKPQTTFVMLDSSGEVQDVLYTGSLTLRSQSASDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKEDIYEVIFKMVEENPRDVGHEMDGLSIVYGDESLPRLYENSRISSEQLPSQQLGIVRRAVALGRYLQNPLAMVATLCGPRKEILSWKLSPLESFLNPDDKFGMVEQVMVDVTNQVGLDINLAISHEWLFAPLQFISGLGPRKAAFLQRSLVRAGAIFTRKDFLTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYILAQELAKDVYEEDGTGDANDDDDALEMAIEHVRDRPSYLKNLDVEEYAAGKERQDKIETFYDIKRELIQGFQDWRKQYEEPSQDEEFYMISGETEETLAEGKMVQVTVRRLQAQKAICGLESGMTGILMKEDYTDDWRDIIELSDRLHEGDMLTCKIKSIQKNRYQVFLVCKDSEMRRDRLQNNHDLDPYYHEDRSCLQSEQDKTRKEKELAKKHFKPRMIVHPRFQNITADEAMEYLSDKDPGESIFRPSSRGPSYLTLTLKIHDGVYAHKDIVEGGKEKKDIASLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVTHLKTMLNYRKFKKGSKTEVDELLRIEKAEYPMRIVYSFGISHEHPGTFILTFIRSTNPHHEYIGLYPKGFRFRKKMFEDIDRLVSYFQRHIDDPQNDSTPSIRSVAAMVPMRSPATGGSSGASVGSGWGGSNSEGGWRGHSHDRDRSSTPGSRTGRSDYRNNGNRDEHPSGVPRPYGGGRGRGRGSYNNSSRGHNSNSERQDSGYGTTRWGSAPKDGDDGLSNFPGAKVQNSPGREAFPGGWGGGGASTSDSNAGWGRGSGGAGPSDAEHGNSGWGTGSKRNSDNGWSGGSSGR 1594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01986 1594 MobiDBLite consensus disorder prediction 1391 1594 - -
Car03g01986 1594 MobiDBLite consensus disorder prediction 1416 1430 - -
Car03g01986 1594 MobiDBLite consensus disorder prediction 119 154 - -
Car03g01986 1594 SUPERFAMILY RuvA domain 2-like 970 1059 IPR010994 -
Car03g01986 1594 CDD SH2_Cterm_SPT6_like 1305 1391 IPR035018 -
Car03g01986 1594 Pfam Acidic N-terminal SPT6 31 79 IPR028083 -
Car03g01986 1594 Gene3D - 218 959 - -
Car03g01986 1594 PIRSF Spt6 7 1461 IPR017072 GO:0032968
Car03g01986 1594 MobiDBLite consensus disorder prediction 72 179 - -
Car03g01986 1594 SUPERFAMILY Nucleic acid-binding proteins 1079 1159 IPR012340 -
Car03g01986 1594 MobiDBLite consensus disorder prediction 1437 1451 - -
Car03g01986 1594 Coils Coil 18 20 - -
Car03g01986 1594 MobiDBLite consensus disorder prediction 73 118 - -
Car03g01986 1594 Pfam SH2 domain 1173 1390 IPR035420 -
Car03g01986 1594 Gene3D - 685 1076 IPR037027 GO:0006139
Car03g01986 1594 Gene3D - 1077 1165 IPR012340 -
Car03g01986 1594 Coils Coil 32 43 - -
Car03g01986 1594 SUPERFAMILY SH2 domain 1209 1295 IPR036860 -
Car03g01986 1594 SUPERFAMILY Ribonuclease H-like 695 851 IPR012337 -
Car03g01986 1594 ProSiteProfiles S1 domain profile. 1084 1155 IPR003029 GO:0003676
Car03g01986 1594 MobiDBLite consensus disorder prediction 1 40 - -
Car03g01986 1594 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 40 1593 - -
Car03g01986 1594 Gene3D - 251 451 IPR023319 -
Car03g01986 1594 Gene3D - 965 1057 IPR042066 -
Car03g01986 1594 CDD SH2_Nterm_SPT6_like 1206 1294 IPR035019 -
Car03g01986 1594 MobiDBLite consensus disorder prediction 1484 1508 - -
Car03g01986 1594 Pfam Helix-hairpin-helix motif 855 956 IPR032706 -
Car03g01986 1594 SMART S1_6 1082 1155 IPR022967 -
Car03g01986 1594 SMART rnase_8s 695 813 IPR006641 GO:0006139
Car03g01986 1594 MobiDBLite consensus disorder prediction 1572 1594 - -
Car03g01986 1594 SUPERFAMILY RuvA domain 2-like 867 957 IPR010994 -
Car03g01986 1594 Pfam Holliday-junction resolvase-like of SPT6 694 851 IPR028231 -
Car03g01986 1594 Gene3D - 452 889 IPR023323 -
Car03g01986 1594 SUPERFAMILY Tex N-terminal region-like 287 673 - -
Car03g01986 1594 Gene3D SH2 domain 1192 1303 IPR036860 -
Car03g01986 1594 SUPERFAMILY SH2 domain 1341 1392 IPR036860 -
Car03g01986 1594 Pfam HHH domain 971 1058 IPR041692 -
Car03g01986 1594 Gene3D SH2 domain 1304 1401 IPR036860 -
Car03g01986 1594 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 40 1593 IPR017072 GO:0032968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01986 Car-Chr3 65923304 65933624 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01986 K11292 - gmx:100809136 2649.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01986 03 65923304 65933624 Car03g01986 03 65923304 65933624 ECH