Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01941 ATGGCCACCGTCCTCAGAACTCCCACATTCCGACCACAACTCACCACCGCCACTCCATCCTCTTCCAATTACCATAAGACATCAAGAGTTTCGGTCACGTTCTCCAGGAGGAACCCGTCACCACTCAGCATCCTCAGGTTCCCTTCCATTCCCTCCCTGCGCTTCGTTAAGTTAGTACCCTTTGCTTTTGACGGAGACTCCGAGGCCCCTCAAGTTCAAGAACCACCAGAGGTTCAGGTTCTGGACTCTTCAGATGGCGCCATTGGTGTGGAGGATAGTGCAGGTGACGATGAGTTTAGCGACGCTGGTGAAATACCTTCTTCACCTTTGATAGTATTGCTGCAGTCTTACAAAGAAGCCTTAGCTAATAATGATGAAGTCAAAGTTGCTGAGTTGGAATCATCATTAAAATCCATCGATGATGAGATAGTAGGCCTTGAAGGTAAAATAGCTTCTTTATCTGAAGAATTATCAATCGAAAAAGATCGGAAACTAAGGATTGATCGCCTTTCACTGGTCACAAATGCTCAAGGGGAAGTTGTGGAGAGTTTGTTGCCTGTATTAGATAATTTTGAGAGAGCAAAAGCTCAGATTAAGGTGGAGACAGAGGGAGAGGAGAAAATAAACAACAGCTATCAGAGCATATATAAGCAGTTCATTGAAATTCTAAACTCACTTGGAGTTGAACCAGTGGAGACGGTTGGAAAACCCTTTGATCCAATGCTACATGAAGCAATCATGCGCGAGGATTCTGCTGAATTTGAAGATGGCATCATAATTCAAGAATTCAGAAAGGGTTTTCAACTTGGTGACCGCCTCTTACGTCCATCCATGGTGAAGGTATCAGCTGGTCCAGGACCTGCAAAGCCGGAACAAGAAGTATCGCAGGAAGAACAAGTCACAAATGAAATTTCTCAGGACAGCAAAGAGAATGATGGCAGCACAGAAACAGAGTCTGTTTAA 963 0.4465 MATVLRTPTFRPQLTTATPSSSNYHKTSRVSVTFSRRNPSPLSILRFPSIPSLRFVKLVPFAFDGDSEAPQVQEPPEVQVLDSSDGAIGVEDSAGDDEFSDAGEIPSSPLIVLLQSYKEALANNDEVKVAELESSLKSIDDEIVGLEGKIASLSEELSIEKDRKLRIDRLSLVTNAQGEVVESLLPVLDNFERAKAQIKVETEGEEKINNSYQSIYKQFIEILNSLGVEPVETVGKPFDPMLHEAIMREDSAEFEDGIIIQEFRKGFQLGDRLLRPSMVKVSAGPGPAKPEQEVSQEEQVTNEISQDSKENDGSTETESV 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01941 320 Pfam GrpE 125 282 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Car03g01941 320 MobiDBLite consensus disorder prediction 303 320 - -
Car03g01941 320 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 228 284 IPR009012 GO:0006457
Car03g01941 320 CDD GrpE 163 281 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Car03g01941 320 PANTHER GRPE PROTEIN 29 297 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Car03g01941 320 Coils Coil 122 156 - -
Car03g01941 320 Gene3D Head domain of nucleotide exchange factor GrpE 227 282 IPR009012 GO:0006457
Car03g01941 320 Gene3D - 115 225 IPR013805 -
Car03g01941 320 ProSitePatterns grpE protein signature. 238 281 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Car03g01941 320 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 145 227 IPR013805 -
Car03g01941 320 MobiDBLite consensus disorder prediction 1 22 - -
Car03g01941 320 Hamap Protein GrpE [grpE]. 67 283 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Car03g01941 320 PANTHER GRPE PROTEIN HOMOLOG 29 297 - -
Car03g01941 320 MobiDBLite consensus disorder prediction 278 320 - -
Car03g01941 320 PRINTS GrpE protein signature 235 250 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Car03g01941 320 PRINTS GrpE protein signature 262 281 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Car03g01941 320 PRINTS GrpE protein signature 180 195 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01941 Car-Chr3 65448205 65451727 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01941 K03687 - gmx:100820521 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01941 03 65448205 65451727 Car03g01941 03 65448205 65451727 ECH