Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01940 aTGGAATCGAGCATTTTGGAATGCATCGGCGTAGAGATAATCGGAGTAATGTCACCGGTATCAATGTGCATGTTCCTCGTCGTCCTCCTCGTTTACTCCGTTTCCACTTCATCATCACCTGATACCACTATCCGCACCGCTGCAAATCTCGTCTACGACGAGAATCCATCCGACACAGCAACACAAAAACTCGAAGGCGCTCTTCTAAACGCCGtcgtcttcgttatcctcatcgccatcgtcactttcctcatcgtcctcCTATACTATTACAACTGCACCGCTTTCCTCCGTCATTACGTTCGCTTCTCCGCTTTCTTCGTACTCGCTTCCATGGGCGGATCCATTTTCCTTTCCCTAATTCAGCGTTTCTCTATCCCCTTAGATTCCATCACTTGTTTCATTCTCCTCTTCAATTTCACAATCGTCGGTGTTCTCTCTGTCATCGCTTCCGCTATTCCGATTATTCTCCGTCAGTGTTACATGGTTTGTATCGGTATAAGCGTCGCCGCGTGGTTCACTAAGCTTCCTGAATGGACCACGTGGACTTTACTTATCGCTCTCGCTCTTTACGATCTCGTCGCCGTTTTGGCCCCTGGCGGTCCGTTGAAGCTTCTCGTCGAATTGGCTTCAAGCCGAAACGAGGAGCTTCCTGCTCTAATTTACGAAGCTCGACCTACTGTTGCCCCAACCGGTAGGGCTGCTACGTTAGGGTTTTTAGTCGCCGGCGTTTCAGAATCACGATCGTCGTCAATTGAGCTTCAAGTGGTCCCCACTGAGAATCAGGGTAATACTAATACTAACATTCATGGTGCTGGCGATTCTGTTGGTGTTGTTAGGGTTCAGGATTTTCTAAATGATGAAGAGGAAAGATCTCCTTTGGTTGGTAATGGTAACCGTGAAGAGGAAATGTCTCCACTTGTTGAGGTGAATCGTAATGAGAGAAGGGAAATAGAGGAAATTTCTGAGAGGGGATTTAAGCTTGGACTTGGTGACTTTGTTTTCTACAGTGTTCTTGTTGGTAGAGCTGCAATGTATGATCTCATGACTGTCTATGCTTGTTACCTTGCAATTATATCTGGACTTGGTTGCACTCTCATTTTGTTGTCGAAAATGGTGAATATAAAGATTGCTACTGCATTTGAAGTTTCTGGTACCAGTGCTGCTCTTTTGAATGCCCTTAATCAAGGATTTCATCCACATAATCTTCCATCAGCTGATGATCAAGTTTTGGATATAAGGGCTTCTGAGGCTACCAGTttattttctttcttctTTCAAGGAGAGGATCAACAAAATGAACTTTACTGTCAATCAGCTAATCGATATGATTATCCCTATCATTCTTACATTGAGCACAATGATATGATTGTCAACTTATTAATATTAAGTCATCACTATTAG 1404 0.4217 MESSILECIGVEIIGVMSPVSMCMFLVVLLVYSVSTSSSPDTTIRTAANLVYDENPSDTATQKLEGALLNAVVFVILIAIVTFLIVLLYYYNCTAFLRHYVRFSAFFVLASMGGSIFLSLIQRFSIPLDSITCFILLFNFTIVGVLSVIASAIPIILRQCYMVCIGISVAAWFTKLPEWTTWTLLIALALYDLVAVLAPGGPLKLLVELASSRNEELPALIYEARPTVAPTGRAATLGFLVAGVSESRSSSIELQVVPTENQGNTNTNIHGAGDSVGVVRVQDFLNDEEERSPLVGNGNREEEMSPLVEVNRNERREIEEISERGFKLGLGDFVFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSKMVNIKIATAFEVSGTSAALLNALNQGFHPHNLPSADDQVLDIRASEATSLFSFFFQGEDQQNELYCQSANRYDYPYHSYIEHNDMIVNLLILSHHY 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01940 467 PANTHER PRESENILIN 1 372 IPR001108 GO:0004190|GO:0016021|GO:0016485
Car03g01940 467 PANTHER PRESENILIN 1 372 - -
Car03g01940 467 SMART psh_8 65 389 IPR006639 GO:0004190|GO:0016021
Car03g01940 467 Pfam Presenilin 11 370 IPR001108 GO:0004190|GO:0016021|GO:0016485
Car03g01940 467 Gene3D Presenilin 302 391 IPR042524 -
Car03g01940 467 PRINTS Presenilin family signature 17 27 IPR001108 GO:0004190|GO:0016021|GO:0016485
Car03g01940 467 PRINTS Presenilin family signature 192 209 IPR001108 GO:0004190|GO:0016021|GO:0016485
Car03g01940 467 PRINTS Presenilin family signature 175 182 IPR001108 GO:0004190|GO:0016021|GO:0016485
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01940 Car-Chr3 65438205 65442527 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01940 1 370 Miscellaneous Gene Families AT1G08700 63.789 2.40e-165 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01940 K04505 - gmx:100799010 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01940 03 65438205 65442527 Car03g01940 03 65438205 65442527 ECH