Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01904 ATGCTATCATGCACTAACAGCATCTTCCATGGCCCTGCCACCAAAAATCGCCATTCCCAACCTTCTAAGTTCCAACGTCCCAAACCTCTCCTCTTTCCTCCCCGTCCTCGCTTGGCCACTATCGGGAATTTCAAGTTCCATTCTCCGTTTTCTGGCAAGAAACTATTCAGTGTAAAAGCTTCTATTGATTCTTCGTCACAGGTTTTAGAGTCACTCGATATTGGTGGTCCGCACATTGGACTGCAACCGTATTCCGTGAAGATTCCCGTCGGTGACAGATATATTTTGGTTGAGACTGGCCATATGGGAAGGCAAGCAAGTGGCTCTGTTACAGTTACAGATGGAGAGACTATTGTCTACACCACTGTTTGTTTCAATGATGTTCCTAGCGAGCCATCTGATTTTTTCCCCCTTTCTGTGAATTATCAAGAGCGTTTTTCAGCTGCTGGTCGCACTAGTGGAGGTTTTTTCAAACGAGAAGGAAAGACAAAGGATCACGAGGTTCTTATTTGTAGATTGATTGATAGGCCTCTGCGTCCTACTATGCCTAAGGGCTTCTACCATGAAACACAAATATTATCTTGGGTTTTGAGCTATGATGGATTGCATAGCCCCGATTCTTTGGCTGTCACTGCAGCTGGTATAGCACTTGCACTTTCAGAAGTGCCCATGACAAAAACAGTTGCTGGAGTTCGAATTGGCCTTGTTGGTGATAAGTATATTGTAAACCCTACTACTGAGGAGATGGAAAACTCTGAGTTGGACCTCATGCTGGCTGGCACAGACAGTGCAATATTGATGATCGAGGGTTATGGCCATTTTCTTCCAGAAGAGAAGCTACTTAAAGCTGTAGAAGTTGGTCAGGATGCAGTGCGTGCAATTTGTAATGAGGTAGATGTCTTGGTCAAGAAATGTGGGAAACCAAAGATGACTGATGCCATCAAGTTGCCTCCTCCCGAGCTTTATAAATATGTTGAGGAAATTGCTGGTGATGAGTTGGTAAAAGTTCTTCAAATTAGAAACAAAATACCAAGAAGGAAAGCCCTCTCATCATTAGAAGAAAAGGTTCTTAAGATACTTACAGAAAACGGGTTTGTCATAAATGACGCATCACCAAGGAGTAATGCTGAAACCATTGCAGAGATTCTTGAGGTTGAGGATGAAGATGAGGAAGTAATTGTTGATGGTGAAGTTGATGAAGGCGATGTTCATATAAAGCCCACTCCACGCAAACCAACACTTTTATTTTCTGAGGTAGATGTGAAGTTGGTATTTAAGGAAGTCACATCCAAGTTTTTGAGGAAACGTATAGTAGAGGGTGGGAAAAGGAGTGATGGTAGAACACCAAATGAAATTCGTCCAATTAACTCAAGCTGTGGCCTGTTACCTAGAGCACATGGAAGTGCTCTTTTTACGAGGGGCGAGACACAGTCACTAGCTGTTACTACACTTGGAGATAACAAGATGGCACAAAGAATAGACAATCTTATGGGTGTTGATGATTACAAGAGGTTCTACCTGCAGTATTCGTTCCCTCCTTCATGTGTTGGAGAGGCTGGCCGGATTGGCGCACCGAGTAGAAGAGAAATTGGTCATGGGATGCTTGCTGAGAGATCGCTTGAAACAATTTTGCCTTCTGAAAATGACTTCCCTTACACTATTCGTGTTGAGAGTACTATTACAGAAAGCAATGGTTCTTCAAGCATGGCATCTGTTTGTGGAGGTTGCTTAGCATTGCAAGATGCCGGGGTTCCTATTAAGTGCTCAATTGCTGGAATTGCAATGGGTTTGGTTCTTGATACCAAGGAATTTGGTGGAGATGGAACTCCGCTTATTCTGTCCGACATAACTGGATCTGAAGATGCATCTGGAGATATGGATTTTAAGGTTGCTGGGAATGAAGATGGCATAACTGCATTTCAGATGGACATTAAGGTGGGTGGAATTACCTTGCCCATCATGAGAGAAGCACTCCTACAGGCAAGAGAGGGCAGAAAGCATATACTTGGAGAAATGATGAATTGCTCGCCCCCTCCAGCAAAAAGGCTTTCAAAGTATGCTCCTCTGATTCACGTCATGAAGGTCAGACCGGATAAAATAAATCTCATAATTGGTTCTGGTGGGAAAAAAGTGAAGAGCATTATTGAGCAATCTGGAATAGAGGCTATTGATACTGAAGATAATGGCACTGTGAAAATATATGCGAGAGATTTGGCTAGTTTAGAGAAATCTAAGGCTATCATTAGTAATTTGACAATGGTTCCAAGTGTTGGTGATGTATATAGGAACTGTGAAATCAAATCAATAGCTACGTATGGAGTTTTTGTAGAGATAGCTCCTGGACGGGAGGGACTTTGCCATATTAGTGAACTGAGTTCAGGTTGGCTACCTAAGGCAGAAGATGTTTTCAAGGTGGGAGATCGGATTGATGTTAAACTTATTGAGATAAATGATAAGGGACAGCTGCGTCTTAGTCACCGAGCACTGCTTCCTGATGCAGATCCAGACAATTCAAATTCAAATGCTACAGCAGCTTTGCCAGACTCAGCTAATAATGGTTTGTCGGATGAAGCTACAAGCCTGACAAATGCTGGTTTAGTTGAAGGGAAAACTGAACAGACTAATGATAATTTTAACACTCCCAAAGGCACAGTCTCGTCTAAAAGGAATTCGGAGGACGATTCTGTACTTCCATCGAAAAAGTTTATCCGGAGATCGGTCAGCCCTTCCCAGGATAAGCCCGTGGCTAACAAAGACAAGATAAAGAAGACCGGCAATAGAGCAGTAAGTAGTGTCTCTGGCAAAGATGAAAGTAGTTTGGTTGGTGAACAGGCATAA 2838 0.4285 MLSCTNSIFHGPATKNRHSQPSKFQRPKPLLFPPRPRLATIGNFKFHSPFSGKKLFSVKASIDSSSQVLESLDIGGPHIGLQPYSVKIPVGDRYILVETGHMGRQASGSVTVTDGETIVYTTVCFNDVPSEPSDFFPLSVNYQERFSAAGRTSGGFFKREGKTKDHEVLICRLIDRPLRPTMPKGFYHETQILSWVLSYDGLHSPDSLAVTAAGIALALSEVPMTKTVAGVRIGLVGDKYIVNPTTEEMENSELDLMLAGTDSAILMIEGYGHFLPEEKLLKAVEVGQDAVRAICNEVDVLVKKCGKPKMTDAIKLPPPELYKYVEEIAGDELVKVLQIRNKIPRRKALSSLEEKVLKILTENGFVINDASPRSNAETIAEILEVEDEDEEVIVDGEVDEGDVHIKPTPRKPTLLFSEVDVKLVFKEVTSKFLRKRIVEGGKRSDGRTPNEIRPINSSCGLLPRAHGSALFTRGETQSLAVTTLGDNKMAQRIDNLMGVDDYKRFYLQYSFPPSCVGEAGRIGAPSRREIGHGMLAERSLETILPSENDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGIAMGLVLDTKEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPIMREALLQAREGRKHILGEMMNCSPPPAKRLSKYAPLIHVMKVRPDKINLIIGSGGKKVKSIIEQSGIEAIDTEDNGTVKIYARDLASLEKSKAIISNLTMVPSVGDVYRNCEIKSIATYGVFVEIAPGREGLCHISELSSGWLPKAEDVFKVGDRIDVKLIEINDKGQLRLSHRALLPDADPDNSNSNATAALPDSANNGLSDEATSLTNAGLVEGKTEQTNDNFNTPKGTVSSKRNSEDDSVLPSKKFIRRSVSPSQDKPVANKDKIKKTGNRAVSSVSGKDESSLVGEQA 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01904 945 SUPERFAMILY Ribosomal protein S5 domain 2-like 424 621 IPR020568 -
Car03g01904 945 MobiDBLite consensus disorder prediction 926 945 - -
Car03g01904 945 SUPERFAMILY Ribosomal protein S5 domain 2-like 84 223 IPR020568 -
Car03g01904 945 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 683 752 IPR036612 GO:0003723
Car03g01904 945 Gene3D - 403 684 IPR027408 -
Car03g01904 945 Hamap Polyribonucleotide nucleotidyltransferase [pnp]. 82 830 IPR012162 GO:0003723|GO:0004654|GO:0006402
Car03g01904 945 CDD PNPase_KH 688 748 - -
Car03g01904 945 MobiDBLite consensus disorder prediction 834 886 - -
Car03g01904 945 Pfam S1 RNA binding domain 765 827 IPR003029 GO:0003676
Car03g01904 945 ProSiteProfiles Type-1 KH domain profile. 688 748 - -
Car03g01904 945 Gene3D - 758 829 IPR012340 -
Car03g01904 945 Pfam 3' exoribonuclease family, domain 2 228 289 IPR015847 -
Car03g01904 945 CDD S1_PNPase 758 826 - -
Car03g01904 945 TIGRFAM polynuc_phos: polyribonucleotide nucleotidyltransferase 417 828 IPR012162 GO:0003723|GO:0004654|GO:0006402
Car03g01904 945 SUPERFAMILY Ribonuclease PH domain 2-like 579 683 IPR036345 -
Car03g01904 945 MobiDBLite consensus disorder prediction 1 30 - -
Car03g01904 945 ProSiteProfiles S1 domain profile. 758 827 IPR003029 GO:0003676
Car03g01904 945 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 72 907 IPR012162 GO:0003723|GO:0004654|GO:0006402
Car03g01904 945 MobiDBLite consensus disorder prediction 1 20 - -
Car03g01904 945 SMART kh_6 687 752 IPR004087 GO:0003676
Car03g01904 945 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 1, CHLOROPLASTIC 72 907 - -
Car03g01904 945 SUPERFAMILY Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 318 448 IPR036456 GO:0003723|GO:0006396
Car03g01904 945 CDD RNase_PH_PNPase_1 84 311 - -
Car03g01904 945 SUPERFAMILY Ribonuclease PH domain 2-like 227 311 IPR036345 -
Car03g01904 945 CDD RNase_PH_PNPase_2 451 679 - -
Car03g01904 945 SUPERFAMILY Nucleic acid-binding proteins 752 831 IPR012340 -
Car03g01904 945 Pfam 3' exoribonuclease family, domain 1 93 223 IPR001247 -
Car03g01904 945 Pfam 3' exoribonuclease family, domain 1 451 585 IPR001247 -
Car03g01904 945 MobiDBLite consensus disorder prediction 830 945 - -
Car03g01904 945 Gene3D K Homology domain, type 1 685 757 IPR036612 GO:0003723
Car03g01904 945 SMART S1_6 756 827 IPR022967 -
Car03g01904 945 Gene3D - 77 308 IPR027408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01904 Car-Chr3 65122781 65139245 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01904 K00962 - gmx:100785430 1368.99