Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01892 ATGGACATCAATCACCACCTATCAGACCTTTCCATTTCCTTACAATCCATTCCCTCCGACGACAACTTCCGTTTCCACTACAACTTCCCCGAATTCAGACACCTCATTGAAGAACTCACCAGAAAATCACAATCCATGTTGAACAAAATCGGCTCCTCCGACCACATTTGGGGCACAGGTTCCTCTTTCCCCTCCGACATCGACGATGCTTATGAATGGATTGTTAACGCAAACGAAGACGTTTTGGAACTTGTTGACGAGTTGGTGGATGAGTTTCATAGGGTTCTGAAGGAGGAAGGTGAAGACGGGTTTCTAAAGATTATGAAGGAGAAGAAAAAAGGTGATGAAACGAAGCCGAAAGTGTCGTTTCATGTACACACTCTTAGGAAGCCTCAGTATCATTATAACCTTGTGGTTGATAATTCAAATGTACCTTTTGAACATGTTTGGTTGGAGAAGAGTGAAGATGGGCAGAGGTTTATACATCCACTGGAGAAATTCTCTGTTTTAGATTTTGTTGATAAAGATAATATTGAGAATCTTGTTCCAGTAAAGCCTCCTCCAATGGAATGCACACCTTTCAAGCTTGTGGAGGAAGTCAAAGGGTTGAAGGAGTTGGCTGCTAAGCTGAGTTCCGTTAATGAATTTGCGGTGGATTTGGAACATAATCAATATCGGTCTTTTCAAGGTTTGACATGCTTGATGCAAATCTCAACCCGGAATGAGGATTTTATTGTCGATACTCTGAAGCTCCGCGATCATGTTGGGACATACCTGAGGGAAGTCTTCAAGGACCCTACCAAGAAAAAAGTCTTGCATGGAGCAGATCGCGACATTGTGTGGCTACAACGAGATTTTGGCATTTACGTCTGTAATATGTTTGACACTGGCCAGGCTTCTAGAGTGTTAAAATTAGAGAGATACAGCTTGCAATATCTTTTGCAACAACTTTGTGAGGTTACAGCAAACAAAGAGTACCAGAATGCAGACTGGAGAGTACGCCCTCTTCCTGATGTGATGATAAGATATGGAAGAGAAGATACACACTATCTGCTTTATATTTATGATTTATTGAGGATCAAGTTATTTGCACTGTCCAAGGAGTCTGAAAGTTCTGATGATCCTCTGTTGGAAGTTTACCAGCGGAGTTATAATGTCTGCATGAAGCTGTACGAGAAAGAACTTTTGACAGAAGACTCCTACCTTCATATAAAGGGGTTAAGAGGGGCAGGCTTTAATGGTCAGCAACTTGCCGTTGTTTCAGGGCTTTGTGAATGGCGTGATATTCTTGCTCGGGCAGAGGATGAAAGTACCGGGTTTATATTGCCAAATAAAGTTATTCTTGAAATTGCTAAGCAGATGCCTGTCACCGCAAGCAATCTACGGCGATTGGTGGCGGAGAGGTCAAGGCTCCCATATGTGGAGCGCAATCATGACATCATTGTTAACATTGTCAGACATTCTATGCAAAATGCTGCTGCCTTTGAAGAAGCTGCACTTCGTTTGAAAGAAGAACATGCAGCAATTATGGCAAACATAGCAGCTGTAAAGGATGGAACTGAGGCTCCCCAATCTCATACCTTGAACTTAAAGGATGAGTGCGAAGCAAATGGAAGCATTGAAATTGAAAATGCCACCTGTGTTAATATCTCCGAGGAGTCCTTGTTTTCTTCTGACCCTGAGGAGGAACATTTTACACATGAAGATGAAAACAGACGAGTAAAAGTTAAAACTGAATGTCTCACTTCAGAGCTCCCAAGTGTCAACCATACTTTTTTTGAGAAGAATAGGGAGGATGCAAATAATAGTGTGGACTCTACAGTGAAGGAAAATGGAATGTCTACCGGTACTTGCGATGCAACACTGCTGGGCAATTCAGCTTCACAAGGGAAATGTTATCCTGACAAAAAGGTCAAGAAAAAGATAAAGGTAGAACAGATTGGATCATCAATCAATCTTCCATATCATTCATTTTTAGGCAACAACGAAAAGTCAAAACTATCTGTAAGTGTAGCGTCGGAAACATCAAACCCACAGAAACCTCTTTCAGGTTCAGTTTCCACGTCTGACATGGATACGGTAGACATAGATTCAAACTCAGGATATGATGCAGAGTCGACTAACCTATAA 2130 0.4174 MDINHHLSDLSISLQSIPSDDNFRFHYNFPEFRHLIEELTRKSQSMLNKIGSSDHIWGTGSSFPSDIDDAYEWIVNANEDVLELVDELVDEFHRVLKEEGEDGFLKIMKEKKKGDETKPKVSFHVHTLRKPQYHYNLVVDNSNVPFEHVWLEKSEDGQRFIHPLEKFSVLDFVDKDNIENLVPVKPPPMECTPFKLVEEVKGLKELAAKLSSVNEFAVDLEHNQYRSFQGLTCLMQISTRNEDFIVDTLKLRDHVGTYLREVFKDPTKKKVLHGADRDIVWLQRDFGIYVCNMFDTGQASRVLKLERYSLQYLLQQLCEVTANKEYQNADWRVRPLPDVMIRYGREDTHYLLYIYDLLRIKLFALSKESESSDDPLLEVYQRSYNVCMKLYEKELLTEDSYLHIKGLRGAGFNGQQLAVVSGLCEWRDILARAEDESTGFILPNKVILEIAKQMPVTASNLRRLVAERSRLPYVERNHDIIVNIVRHSMQNAAAFEEAALRLKEEHAAIMANIAAVKDGTEAPQSHTLNLKDECEANGSIEIENATCVNISEESLFSSDPEEEHFTHEDENRRVKVKTECLTSELPSVNHTFFEKNREDANNSVDSTVKENGMSTGTCDATLLGNSASQGKCYPDKKVKKKIKVEQIGSSINLPYHSFLGNNEKSKLSVSVASETSNPQKPLSGSVSTSDMDTVDIDSNSGYDAESTNL 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01892 709 SUPERFAMILY HRDC-like 396 491 IPR010997 GO:0000166|GO:0044237
Car03g01892 709 Pfam HRDC domain 416 464 IPR002121 GO:0003676
Car03g01892 709 SMART 35exoneu6 194 363 IPR002562 GO:0003676|GO:0006139|GO:0008408
Car03g01892 709 Gene3D HRDC domain 402 497 IPR044876 -
Car03g01892 709 ProSiteProfiles HRDC domain profile. 413 495 IPR002121 GO:0003676
Car03g01892 709 PANTHER 3'-5' EXONUCLEASE 602 678 - -
Car03g01892 709 PANTHER 3'-5' EXONUCLEASE 1 587 - -
Car03g01892 709 Gene3D - 120 401 IPR036397 GO:0003676
Car03g01892 709 Pfam 3'-5' exonuclease 197 360 IPR002562 GO:0003676|GO:0006139|GO:0008408
Car03g01892 709 SUPERFAMILY Ribonuclease H-like 129 394 IPR012337 -
Car03g01892 709 Pfam PMC2NT (NUC016) domain 15 93 IPR012588 GO:0000176|GO:0006396
Car03g01892 709 SMART hrdc7 413 494 IPR002121 GO:0003676
Car03g01892 709 MobiDBLite consensus disorder prediction 669 709 - -
Car03g01892 709 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 602 678 IPR045092 GO:0000175|GO:0000467
Car03g01892 709 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 1 587 IPR045092 GO:0000175|GO:0000467
Car03g01892 709 CDD Rrp6p_like_exo 190 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01892 Car-Chr3 65006471 65014833 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01892 K12591 - gmx:100804872 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01892 03 65006471 65014833 Car03g01892 03 65006471 65014833 ECH