Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01880 ATGGAAAGCAAGCATGCACATAATTATCGATCTTATGAGGATTTTGATCCTGTTTTTAAGTGGCGTAGAGAAGAAGCCCGTGACACCATTGAACTTCATCTTCCAGGTTTTAAGAGAGAGCAAATACGAATTCAGATAAACCATCATGGTGTTTTGGTCATAAGCGGAGAGCGTCCCTTAGATGAAACTAAATGGAGACGCTTCAAGAAAGAATTTCAAATCTCTCAATATTGCAATGAAGATGCTATTCGTGGCAATTTCATGGACAACATTCTTTCTATTGTAATGCCAAAGAAAGTTTCTTTTATTCCTCAAGAAGAACAAATTCCAGAACTTGAAGATGATGAGGATGATATATATCAAGACAAAACTACATTTCATAATATGGAATTTCAAGGAAAGAGCAGAGCAGAACAAACTGAAGATTACAAATTCAAAGATGCACTATTAGATTCAGAATATACTTACACAACAAACAATCATTTTGAAGAAAATGATGTAGAAACTACTAGAGAGGTTGCTCTTAAATTCATGGTTGTCATCATTGTTCTAATGGTTATAGTTAATTTTCTAGTGGATATGAGCAAAAGCTTCATGGCTTAA 603 0.3416 MESKHAHNYRSYEDFDPVFKWRREEARDTIELHLPGFKREQIRIQINHHGVLVISGERPLDETKWRRFKKEFQISQYCNEDAIRGNFMDNILSIVMPKKVSFIPQEEQIPELEDDEDDIYQDKTTFHNMEFQGKSRAEQTEDYKFKDALLDSEYTYTTNNHFEENDVETTREVALKFMVVIIVLMVIVNFLVDMSKSFMA 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01880 200 Pfam Hsp20/alpha crystallin family 22 107 IPR002068 -
Car03g01880 200 CDD ACD_sHsps-like 29 98 - -
Car03g01880 200 Gene3D - 1 101 IPR008978 -
Car03g01880 200 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 10 115 IPR002068 -
Car03g01880 200 PANTHER HSP20/ALPHA CRYSTALLIN FAMILY PROTEIN 1 200 - -
Car03g01880 200 PANTHER HEAT SHOCK PROTEIN 26 1 200 IPR045045 -
Car03g01880 200 SUPERFAMILY HSP20-like chaperones 12 108 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01880 Car-Chr3 64924950 64925927 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01880 - - gmx:100801505 193.356