Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01876 ATGGAAGTAGCTATTTCTCTACATACACAGAAGCAGAATTTGCAGACAATAGGTCGCAAAGTTTGTTCTGGATTCCAAAAAGATCTGTGGCTTGTTGTGCGAGAAGGATCTCTGAATGATGTAGAGTCAGCATTGACATCACTAAAAAAGAGTGGGGGCAATATCAATTTGAGGAACACCTTCGGGCTGACTCCTCTTCATGTTGCAGCTTGGAGAAACCACATTCCCATTGTAAAGAGGCTTCTTGCAGCTGGTGCAGATCCTGATGCCCGAGATGGAGAATCAGGATGGAGTAGTCTTCACAGGGCTCTGCATTTTGGTCACCTTGCTGTTGCAAGCATCCTTCTTCAGCATGGTGCCTCGATTACATTGGAGGACTCTAAATCTCGAATACCTATAGATCTCTTATCTGGCAATGTGTTTCAGGTTTTTGGCAATGAACACGGTTCAGTTGCTACTGAGTTATTTAGTTGGGGCAGTGGTGCAAATTATCAGCTTGGAACTGGAAATGCGCATATTCAGAAGCTACCATGCAAAGTTGATTCACTTAATGGTTCGATCATTAAGCTGACTTCTGCAGCAAAGTTCCATAGTGTGGCACTTACTGATCGTGGAGAAGTGTATACTTGGGGATTTGGAAGGGGAGGCCGTCTAGGGCATCCCGATTTTGACATACACAGTGGTCAAGCTGCTGTCATCACTCCCCGCCAGGTGACTTCTGGTTTGGGTTCACGAAGAGTGATGGCAATTGCTGCAGCTAAGCATCATACTGTTATTGCTACTCAGGGCGGGGAAGTGTTCACCTGGGGATCCAATAGAGAGGGACAACTAGGGTACACTTCGGTCGATACACAACCCACACCTCGTAGAGTATCTTCTTTGAGGTCAAAAATTGTTGCCGTTGCTGCAGCAAACAAGCACACAGCTGTAGTTTCCGATTTAGGTGAAGTTTTTACTTGGGGTTGCAATAGAGAGGGTCAGCTTGGTTATGGCACCTCAAATTCGGCTTCTAACTACACCCCACATGTAGTCGAATCCTTGAAGGGAAAGACCTTAACCAAAGTTTCTGCTGCAAAATATCACACAATTGTATTAGGATCTGATGGAGAGGTATTTACCTGGGGTCATCGACTTGTAACTCCAAAACGCGTAGTGATTACTAGGAACTTAAAGAAAAGTGGAAGCATTCCTTTAAAGTTTCATCGCAAGGAACGGCTTCACGTAGTTTCTATAGCTGCTGGAATGGCACACAGCATGGCTCTTACAGAAGATGGAGCATTATTTTATTGGGTTTCCTCAGATCCCGATCTTAGATGCCAACAGTTATATGCTATGTGTGGAAGAAATATGGCAAACATATCTGCTGGAAAGTACTGGACTGCAGCGGTTACAGCTACAGGCGATGTTTACATGTGGGATGCGAAGAAAGGTAAGGATAAGCCACTTGTTGCGACTCGGATGCATGGTGTAAAGAAGGCTACTTCAGTTTCAGTTGGCGAAACACATTTATTAATTGTGGCTTCCCTTTATCATCCTGGCTACCCTCTCAACATGATTGATAATTCTCAGAAGCTCAAGTCGAATAACAGAAATAGTATGGAAGAGTTAAATGAAGACATTTTATTTGAGGATATTGATTCCCATAATACATTATATACTGTTCAAAATGATAATATAAGACAGAGGTCTACACCCAGCTTAAAAAGTCTTTGCGAAAAAGTAGCAGCAGAGTGTCTACTGGAGCCACGGAATGCCATACAATTGCTTGAGATTGCTGATTCTCTTGGAGCAGATGATTTGAAGAAATATTGCGAGGACATTGTCATGCGCAACCTTGATTATATATTCTCAGTTTCAACACATGCTGTAGCAAGTGCTTCATTAGATGTTTTGGCGAGCCTCGAGGGGTTGTTAGACCAGAGATCGTCTGAGCCATGGAGTTACCGTCGGCTCCCAACTCCAACTGCTACACTCCCTGTTATCATTGACAGTGAAGAGGATGATAATGAGATAGAGTGTCAAAGAACTTGTGACAAACCCAGGAAAATGTCTGCACTGAAATTGGAGAAAGTTCAAAGATCAGATTCCTTTCTACAGCCAAAGGATGATCCCGATAATGAAATCTCCAAAGTAGTACGAGCTATAAGGAAGAAGTTGCAGCAGATTGAGATGCTTGAAACCAAGCAGTCTAAAGGACATCTTCTCGATGACCAGCAGATTGCGAAACTACAATCTAAGTCAGCACTTGAGAGCTCGCTTGCAGAGCTTGGTGTTCCCGTCGAGAATTCACAGAGTAAAGAGTCGTCTTCTATACTAGCAGAAGGGAAAGGTAGTAGTAAGAAAGGTAAATCATCAAGAAAACAAAGGAGAAAGGGCAGTAGCAAATCAACCATAGAGCAGACAGAAATAGAATCTGTTTATTCCAAAAGTGAAGTGATCCCCGAATCTGAAGACCTGCTGGACATTGACATCATGACCGCTCCTACTTCAAAGGTGGAAGAGGATATCTCCAAACATTTCACAGAAGGCCAGGGTGAAAAAGATGTAGCTTTTGTTGTACAAAAGAAAGATGCTTCAGAGTTGCCGAAAGGTAAGGGTCAGTCACCAAAGGGTTCCAAGAAGAAGAACAAGAAGGGTGGTCTTTCTATGTTTCTGAGCGGTGCTCTTGATGAATCTCCAAAAGAGGTGGTGCCTCCCCCGACACCGAGAAATGAAGGTCCTGCATGGGGCGGGGTGGCCAAGTTTATGAAGGGTTCTACTTCTCTTCGTGAAATCCAGAACGAGCAGAGCAAAATAAAGGGTAACAAGCCAGCTGTTGTTAAAGACAAGGTGGATGATCTTTCTGATTTTGGAAGCGGTGGCAAAATAAAGTTGAGTTCATTTCTTCATTCTAGCCCAATACCTGTTGCCTCAACTCAAAGTTCCCTGGCAACTGATGGAGAAAAAAACACCCCTCCTTGGGCTGCTTCAGGAACCCCTCCTCAACCCACTAGGCCATCTTTAAGGGACATCCAAATGCAACAGGTAAAGAAACTACAAGGCCTTTCCAGTAGTCCAAAGACTAGAACTTCTGGGTTCACTATAGCTACCGGTCAAGGCTCACCATCTGAAGCAAACGGGGTGAACCGTTGGTTCAAGCCCGAAGTTGAAACACCATCATCCATTCGTTCAATTCAAATTGAGGAAAAAGCTATGAAAGATCTCAAGCGATTCTATAGCAGCGTAAAGATTGTTAAAAAGCAATCTTGA 3249 0.4371 MEVAISLHTQKQNLQTIGRKVCSGFQKDLWLVVREGSLNDVESALTSLKKSGGNINLRNTFGLTPLHVAAWRNHIPIVKRLLAAGADPDARDGESGWSSLHRALHFGHLAVASILLQHGASITLEDSKSRIPIDLLSGNVFQVFGNEHGSVATELFSWGSGANYQLGTGNAHIQKLPCKVDSLNGSIIKLTSAAKFHSVALTDRGEVYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVTSGLGSRRVMAIAAAKHHTVIATQGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLRSKIVAVAAANKHTAVVSDLGEVFTWGCNREGQLGYGTSNSASNYTPHVVESLKGKTLTKVSAAKYHTIVLGSDGEVFTWGHRLVTPKRVVITRNLKKSGSIPLKFHRKERLHVVSIAAGMAHSMALTEDGALFYWVSSDPDLRCQQLYAMCGRNMANISAGKYWTAAVTATGDVYMWDAKKGKDKPLVATRMHGVKKATSVSVGETHLLIVASLYHPGYPLNMIDNSQKLKSNNRNSMEELNEDILFEDIDSHNTLYTVQNDNIRQRSTPSLKSLCEKVAAECLLEPRNAIQLLEIADSLGADDLKKYCEDIVMRNLDYIFSVSTHAVASASLDVLASLEGLLDQRSSEPWSYRRLPTPTATLPVIIDSEEDDNEIECQRTCDKPRKMSALKLEKVQRSDSFLQPKDDPDNEISKVVRAIRKKLQQIEMLETKQSKGHLLDDQQIAKLQSKSALESSLAELGVPVENSQSKESSSILAEGKGSSKKGKSSRKQRRKGSSKSTIEQTEIESVYSKSEVIPESEDLLDIDIMTAPTSKVEEDISKHFTEGQGEKDVAFVVQKKDASELPKGKGQSPKGSKKKNKKGGLSMFLSGALDESPKEVVPPPTPRNEGPAWGGVAKFMKGSTSLREIQNEQSKIKGNKPAVVKDKVDDLSDFGSGGKIKLSSFLHSSPIPVASTQSSLATDGEKNTPPWAASGTPPQPTRPSLRDIQMQQVKKLQGLSSSPKTRTSGFTIATGQGSPSEANGVNRWFKPEVETPSSIRSIQIEEKAMKDLKRFYSSVKIVKKQS 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01876 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 153 204 IPR000408 -
Car03g01876 1082 Gene3D - 388 509 IPR009091 -
Car03g01876 1082 Gene3D - 140 387 IPR009091 -
Car03g01876 1082 ProSiteProfiles Ankyrin repeat region circular profile. 61 92 - -
Car03g01876 1082 PRINTS Ankyrin repeat signature 62 77 IPR002110 GO:0005515
Car03g01876 1082 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Car03g01876 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 205 263 IPR000408 -
Car03g01876 1082 MobiDBLite consensus disorder prediction 970 1042 - -
Car03g01876 1082 MobiDBLite consensus disorder prediction 853 913 - -
Car03g01876 1082 Gene3D - 22 139 IPR036770 -
Car03g01876 1082 SUPERFAMILY RCC1/BLIP-II 118 430 IPR009091 -
Car03g01876 1082 PRINTS Chromosome condensation regulator RCC1 signature 154 170 IPR000408 -
Car03g01876 1082 PRINTS Chromosome condensation regulator RCC1 signature 207 223 IPR000408 -
Car03g01876 1082 PRINTS Chromosome condensation regulator RCC1 signature 264 280 IPR000408 -
Car03g01876 1082 PRINTS Chromosome condensation regulator RCC1 signature 301 317 IPR000408 -
Car03g01876 1082 PRINTS Chromosome condensation regulator RCC1 signature 317 331 IPR000408 -
Car03g01876 1082 PRINTS Chromosome condensation regulator RCC1 signature 414 432 IPR000408 -
Car03g01876 1082 Coils Coil 519 539 - -
Car03g01876 1082 Pfam Regulator of chromosome condensation (RCC1) repeat 155 201 IPR000408 -
Car03g01876 1082 Pfam Regulator of chromosome condensation (RCC1) repeat 264 311 IPR000408 -
Car03g01876 1082 Pfam Regulator of chromosome condensation (RCC1) repeat 315 365 IPR000408 -
Car03g01876 1082 Pfam Regulator of chromosome condensation (RCC1) repeat 205 259 IPR000408 -
Car03g01876 1082 SUPERFAMILY RCC1/BLIP-II 408 506 IPR009091 -
Car03g01876 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 315 368 IPR000408 -
Car03g01876 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 369 424 IPR000408 -
Car03g01876 1082 ProSiteProfiles Ankyrin repeat region circular profile. 95 126 - -
Car03g01876 1082 PANTHER ANKYRIN REPEAT FAMILY PROTEIN / REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 1 1081 - -
Car03g01876 1082 SMART ANK_2a 61 90 IPR002110 GO:0005515
Car03g01876 1082 SMART ANK_2a 95 124 IPR002110 GO:0005515
Car03g01876 1082 MobiDBLite consensus disorder prediction 757 775 - -
Car03g01876 1082 Pfam Ankyrin repeats (3 copies) 45 126 IPR002110 GO:0005515
Car03g01876 1082 MobiDBLite consensus disorder prediction 994 1039 - -
Car03g01876 1082 CDD BACK 582 617 - -
Car03g01876 1082 SUPERFAMILY Ankyrin repeat 42 135 IPR036770 -
Car03g01876 1082 ProSiteProfiles Ankyrin repeat profile. 61 93 IPR002110 GO:0005515
Car03g01876 1082 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 1081 - -
Car03g01876 1082 ProSiteProfiles Ankyrin repeat profile. 95 127 IPR002110 GO:0005515
Car03g01876 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 264 314 IPR000408 -
Car03g01876 1082 MobiDBLite consensus disorder prediction 757 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01876 Car-Chr3 64881764 64890915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01876 34 135 Acyl Lipid Metabolism Gene Families AT5G53470 36.275 9.55e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01876 K24810 - gmx:100800604 1741.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01876 03 64881764 64890915 Car03g01876 03 64881764 64890915 ECH