Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01839 ATGATCAGAATCAGATCTAACTTATCTGTGGTGCTATTACGCATAACGCAAAACCCAATCGCTGTTAATCACTGTGATATAGTTCATAAGCCTCTTATGAGTGTTTCTTTCAATGGTTTTAACTCTTCAAACTATGAATCTTTTTTAGCTTCACCAAAATTTGGTTTCTTAGTTAGGTTCCTTTCTACTGAATCCTCAACCAAAAGCTTTGGAGTGTCCACTAGTGCCCCTGccttaggattggatgaggccttgagtgatgacgacgataatgatgatgttaatgacgatgaccatgataagaataagaatcagttacatttaagggatgatggttttgccgaagatgtTAAGACCATTTTGGATATAATGCACGAACCGGGTACTGGACCATCTGAAATTAAGCACAAGCTGGAGCATTGCAGTGTTAAGGCATCATCAGAGTTAGTTGTGGAGATTCTTTCGAGAATCCGCAATGATTGGGAAGCAGCTTTCACATTTTTCTTGTGGGCTGGGAAGCAATCAGGGTATGCTCATTCGGTCCGCGAATACCATTCAATGATATCAGTCCTTGGTAAAATGAGGAGGTTTGATACTGCTTGGGCTTTAATTGAAGAAATGAGAGGAGTACGAACTGGTGAATCTCTTGTCATTCCACAAACTCTCATGATTATGATAAGGAAATATTGTGCTGTGCATGATGTTGGAAGGGCTATAAACACGTTCTATGCTTTTAAACGGTTTAACTTGCGAGTTGGGTTGGAGGAATTTCATGGCCTTCTTTCTGCACTTTGCAGGTACAAGAATGTGGAGGATGCTGAGCACTTATTGTTTTGCAACAAAAATGTTTTCCCACTTGACACCAAAAGCTTTAACATCATTCTTAATGGATGGTGCAGTTTTATTGTTAGTGCGCGCAATGCAGAAAGGGTTTGGGAGGAGATGAGTAAGAGAGGAATCCGACACGACGTTGTCTCCTATGCAAGTATGATATCTTGTTATTCGAAGTCTTCTAAACTTTATAGGGTGCTTCAGCTGTTTGAGCAAATGAAGAGAAGAAACATCGCTCCTGATAGGAAGGTTTATAACGCGGTCATTTATTCTCTTGCGAAGAATAGGCTTGTGAAAGAAGCCGTAAATCTCATTGGAACAATGGAAGACAACAATGTTACTCCAGACGCCATTACTTACAACTCCCTAATCAAGCCTCTCTGTAAAACCCACAAAATTGACGAAGCAAATGAATTTTTCGATGAGATGTTGAAGCGACACTTATGCCCGTCTATTCGGACTTTTCATGCTTTCTTCCGAATATTAAGAGTCAAGGAAGAAGTATTTGAGCTTTTGGACAAAATGAGAGAGTTGGGGTGTGATCCAACGATTGAGACTTATATAATGTTGATAAGAAAGTTTTGCCGGTGGCGCCAGCTCGATGAAGTGATTAGGATATGGAATGCTATGAGGGAAGGTGGAATCAGCCACGATCGTAGCTCTTATATTGTACTGATTCATGGTCTGTTTCTGAATGGAAAGGTAGAGGAAGCATACAGATATTATCTAGAGATGCAAGAGAAAGGTTTCCTACCTGAACCAAAGACCGAAAAAATGCTTGAGGCATGGCTTTCTGGGAGACCACAAGTAACAGAGGGCCAAGTAAAAGATGTAGAACACAATCAATTGGAACATGGTAGTCTTAAAAAGAATTTCAAACACAGTCCCAGTAAATCTGATAGGGAAAAAGCTTTTCTTCGCGAACCTGAGACAAGAAGAGTAACAAGAGAACGAGGCTTTTCTTTCTGGGAGCAGTAA 1809 0.3781 MIRIRSNLSVVLLRITQNPIAVNHCDIVHKPLMSVSFNGFNSSNYESFLASPKFGFLVRFLSTESSTKSFGVSTSAPALGLDEALSDDDDNDDVNDDDHDKNKNQLHLRDDGFAEDVKTILDIMHEPGTGPSEIKHKLEHCSVKASSELVVEILSRIRNDWEAAFTFFLWAGKQSGYAHSVREYHSMISVLGKMRRFDTAWALIEEMRGVRTGESLVIPQTLMIMIRKYCAVHDVGRAINTFYAFKRFNLRVGLEEFHGLLSALCRYKNVEDAEHLLFCNKNVFPLDTKSFNIILNGWCSFIVSARNAERVWEEMSKRGIRHDVVSYASMISCYSKSSKLYRVLQLFEQMKRRNIAPDRKVYNAVIYSLAKNRLVKEAVNLIGTMEDNNVTPDAITYNSLIKPLCKTHKIDEANEFFDEMLKRHLCPSIRTFHAFFRILRVKEEVFELLDKMRELGCDPTIETYIMLIRKFCRWRQLDEVIRIWNAMREGGISHDRSSYIVLIHGLFLNGKVEEAYRYYLEMQEKGFLPEPKTEKMLEAWLSGRPQVTEGQVKDVEHNQLEHGSLKKNFKHSPSKSDREKAFLREPETRRVTRERGFSFWEQ 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01839 602 MobiDBLite consensus disorder prediction 566 589 - -
Car03g01839 602 Pfam PPR repeat family 361 406 IPR002885 -
Car03g01839 602 Pfam PPR repeat family 323 360 IPR002885 -
Car03g01839 602 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 70 592 - -
Car03g01839 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 322 IPR002885 -
Car03g01839 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Car03g01839 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Car03g01839 602 TIGRFAM PPR: pentatricopeptide repeat domain 361 394 IPR002885 -
Car03g01839 602 TIGRFAM PPR: pentatricopeptide repeat domain 498 529 IPR002885 -
Car03g01839 602 TIGRFAM PPR: pentatricopeptide repeat domain 463 495 IPR002885 -
Car03g01839 602 TIGRFAM PPR: pentatricopeptide repeat domain 184 208 IPR002885 -
Car03g01839 602 TIGRFAM PPR: pentatricopeptide repeat domain 325 358 IPR002885 -
Car03g01839 602 TIGRFAM PPR: pentatricopeptide repeat domain 395 428 IPR002885 -
Car03g01839 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 460 494 IPR002885 -
Car03g01839 602 Pfam Pentacotripeptide-repeat region of PRORP 410 543 IPR033443 -
Car03g01839 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Car03g01839 602 Gene3D Tetratricopeptide repeat domain 408 586 IPR011990 GO:0005515
Car03g01839 602 MobiDBLite consensus disorder prediction 84 107 - -
Car03g01839 602 Pfam PPR repeat 184 208 IPR002885 -
Car03g01839 602 PANTHER OS01G0816000 PROTEIN 70 592 - -
Car03g01839 602 Gene3D Tetratricopeptide repeat domain 132 302 IPR011990 GO:0005515
Car03g01839 602 Gene3D Tetratricopeptide repeat domain 303 407 IPR011990 GO:0005515
Car03g01839 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01839 Car-Chr3 64503031 64505704 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01839 173 551 Glycosyltransferase AT1G05670 26.357 1.88e-34 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01839 - - gmx:100785546 907.901