Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01813 ATGGCTTCTCTCTTCCCATCTCCACGACACATTTCTTCCACAACACCCTTCATCCCCAAACTCACCTCTTTCCCAAAATCAAACAACCTCTTCATCCTCAACTACCCCTTTCACCACAAAAAACTACTATTTCCACCCCTCTTTTCCCCCATTGCAGTCTACACTCAAGGACTCTACACCCCTTCTTCACCCTCCAAAAAAACAGACAAAATTGATCCTGAAAACGACCCAATTTCGATTCTCAACGAACGAATTCGTCgtgaatatggcaaaagggaagtttcaaggactgtaatggacactgaggaagctgataAGTACATACAAATGGTGAAGGAACAACAGCAGAGAGGGCTTCAGAAGCTTAAAGGTGATAGAGAGGGTAAAGATGGTTCCTTTAGCTATAAGGTAGACCCTTATACACTTCGTTCTGGTGATTATGTTGTTCACAAGAAAGTTGGTATTGGAAGGTTTGTTGGTATCAAATTCGATGTTTCGATGAAATCTGTTGAGCCTACTGAGTATGTTTTTATAGAGTATGCTGATGGAATGGCTAAGCTTCCTGTTAAACAGGCTTCTAAAATGCTCTATAGATATAGTCTTCCAAATGAAAACAAAAAGCCTAGGACATTGAGCAAGTTGAATGATACTAGTGCGTGGGAGAAAAGAAAAACTAAAGGGAAAGTTGCCATACAGAAGATGGTTGTTGATTTGATGGAACTCTATCTACATAGGCTTAAACAAAGAAGGCCACCCTATCCTAAGAGTCATGCCGTGGCTGAATTCGCCGCACAATTTCTTTATCAACCTACACCGGATCAGAAACAGGCTTTTGTTGACGTTGAGAAGGATTTGACAGAGCGAGAAACTCCGATGGACAGATTAATTTGTGGAGATGTTGGTTTTGGTAAAACTGAGGTTGCACTGCGTGCTATCCAATGTGTTGTCTCAGCTAAAAAGCAAGCGATGGTTCTCGCACCAACTATAGTTCTAGCAAAACAACATTTTGATGTTATTTCAGAGCGCTTTTCTGTATATCCTGATATTAAAGTTGGACTACTAAGCAGGTTTCAGACCAGATCAGAAAAGGAAGGGTACTTGGAAATGATTAAGAGTGGTGACCTAGATATTATTGTTGGAACTCATTCGCTCCTTGGAAACCGTGTTGTTTATAACAATCTTGGCTTGCTTGTGGTTGATGAGGAACAGAGGTTTGGTGTCAAACAGAAGGAAAGGATTGCTTCTTTTAAAACTTCTGTGGACGTACTTACCTTATCCGCAACCCCCATACCACGGACGCTTTATTTAGCGTTGACAGGATTTCGTGATGCTAGTTTAATTTCAACTCCACCTCCAGAAAGAGTTCCTATCAAGACTCAGCTTTCTTCATTCAGTAAGGACAGAGTAGTATCAGCCATTAAGTATGAGCTGGATCGCTGTGGTCAAGTTTTTTATGTTCTGCCTCGTATTAAAGGACTTGACGAAGCAATGGAATTTCTTCAAGAGTCATTCCCCGATGTGGAAATAGCCGTTGCCCACGGGAAGCAATACTCAAAGCAATTAGAGGATACCATGGAGAAGTTTGCTCTAGGTGAAATAAAAATCCTTATCAGCACAAATATTGTTGAAAGTGGGCTTGATATTCAAAATGCAAACACCATCATCATTCAGGATGTTCAACAATTTGGCCTTGCACAGTTGTACCAGTTGCGTGGAAGGGTTGGGCGAGCAGACAAGGAAGCATATGCATACTTATTTTATCCTGATAAGAATCTGCTCTCTGATCAAGCATTGGAGAGGCTTGCAGCTCTTGAAGAATGCCGTGAACTCGGTCAAGGCTTCCAACTAGCCGAGAGAGACATGGGTATAAGAGGTTTTGGTACTATTTTTGGTGAACAACAAACAGGAGATGTTGGAAATGTTGGCATTGATCTGTTCTTTGAGATGCTCTTTGAGAGTTTATCCAAGGTTGAAGATCATCGAGTTGTATCGGTTCCTTACCACTCAGTGCAGGTTGACTTAAATATCAATCCACACCTCCCTTCCGAGTACATAAATCATCTCGACAACCCTATGGAAATAATAAATGAAGCTGAGCGTGTCGCTGACAAAGACATCTGGAGTCTAATGCAATTTACAGAGAATTTGCGCCGCCAATATGGCAAGGAGCCTCGCCCGATGGAGATTATCTTAAAGAAGCTTTACTTGAGGAGAATGGCAGCTGATATAGGTGTAACCAGAATATACTCTTCAGGGAAGACAGTATTTATGAAAACAAACATGAGTAAAAAGGTTTTCAAGATGATGACAGAGTCGATGACATCGGATATATATAAAAATTCATTACTTCTTGAGGGTGACCAAATTAAGGCCGAACTTCTTTTAGAGCTACCAAAAGAACAACTTCTTAATTGGATCTTTAACTGCATGGCTGAACTTCATGCTTCACTAGCAGCCCTCATAAAATTTACTATGTCAAAAGGCCGCGAACTAACCATGGCGGACGCAGAACAAGATTTGTGTTGCATGATCGACTTTGCAGCACTGGACATCAAAGCACAGAGCTACATCAGTGTGGATAGTTACAAGCTGCAAGCAAGCACCTCGAGTTTGAGGGAGGACAGTTGGCAAAGTCTCAGAAATTTGTGGCGGAAGATTAGAGATTTGTGGTGGAAGATTAGGAGAAAGTCCAACAAGACAGGGTGTGGTGGGGGAAATGGAGAAGGTGTAGCAGGAGTAACGATCGATGTGGGTGGTGTGGGAAATGGAGAAGTTGGAGGAGGAGTAATGGTGGAAGTGGGTGGTGGAGAGGTTGTAGGAGGAGTTGTTTATGAAGAAATTTTCTTCAGGAGAAAATCCAACAAGATAGGGTGTGGTGGGGGAAATGGAGGTGTTGCAGGAGTAATGGTGGATGTGGATGGTGTAAAAAATGGAGAAGGTGTAGGAGGAGTAACGGTGGGAGTGGGTGGTGGAGAGGGTGTGAGAGGAGTTGTTTCAGAAGAAAATTTCTTCAGATCACATTTCTTCCCCAACACGCTTCTTCCTCAACTACCCATTTCACCACAAAAAACTACTATTTCCACCCATCTTTTCCTCCCATTGCATTTGAGGAGGAGAAAATCCAACAAGATAGGGTGTGGTGGGGGAAATGGAGGTGTTGCAGGAGTAATGGTGGATGTGGATGGTGTAAAAAATGGAGAAGGTGTAGGAGGAGTAACGGTGGGAGTGGGTGGTGGAGAGGGTGTGAGAGGAGTTGTTTCAGAAGAAAATTTCTTCAGGTTGATCAGAATCATCAATATCAATAGTAATATCAATACTAGATGA 3324 0.4155 MASLFPSPRHISSTTPFIPKLTSFPKSNNLFILNYPFHHKKLLFPPLFSPIAVYTQGLYTPSSPSKKTDKIDPENDPISILNERIRREYGKREVSRTVMDTEEADKYIQMVKEQQQRGLQKLKGDREGKDGSFSYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVSMKSVEPTEYVFIEYADGMAKLPVKQASKMLYRYSLPNENKKPRTLSKLNDTSAWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPKSHAVAEFAAQFLYQPTPDQKQAFVDVEKDLTERETPMDRLICGDVGFGKTEVALRAIQCVVSAKKQAMVLAPTIVLAKQHFDVISERFSVYPDIKVGLLSRFQTRSEKEGYLEMIKSGDLDIIVGTHSLLGNRVVYNNLGLLVVDEEQRFGVKQKERIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIKTQLSSFSKDRVVSAIKYELDRCGQVFYVLPRIKGLDEAMEFLQESFPDVEIAVAHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAYAYLFYPDKNLLSDQALERLAALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEDHRVVSVPYHSVQVDLNINPHLPSEYINHLDNPMEIINEAERVADKDIWSLMQFTENLRRQYGKEPRPMEIILKKLYLRRMAADIGVTRIYSSGKTVFMKTNMSKKVFKMMTESMTSDIYKNSLLLEGDQIKAELLLELPKEQLLNWIFNCMAELHASLAALIKFTMSKGRELTMADAEQDLCCMIDFAALDIKAQSYISVDSYKLQASTSSLREDSWQSLRNLWRKIRDLWWKIRRKSNKTGCGGGNGEGVAGVTIDVGGVGNGEVGGGVMVEVGGGEVVGGVVYEEIFFRRKSNKIGCGGGNGGVAGVMVDVDGVKNGEGVGGVTVGVGGGEGVRGVVSEENFFRSHFFPNTLLPQLPISPQKTTISTHLFLPLHLRRRKSNKIGCGGGNGGVAGVMVDVDGVKNGEGVGGVTVGVGGGEGVRGVVSEENFFRLIRIININSNINTR 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01813 1107 Gene3D - 669 817 IPR037235 -
Car03g01813 1107 Gene3D - 142 656 IPR027417 -
Car03g01813 1107 Pfam TRCF domain 674 763 IPR005118 GO:0006281
Car03g01813 1107 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 285 447 IPR014001 -
Car03g01813 1107 CDD DEXHc_TRCF 260 449 - -
Car03g01813 1107 Pfam Helicase conserved C-terminal domain 476 577 IPR001650 -
Car03g01813 1107 SUPERFAMILY CarD-like 136 205 IPR036101 -
Car03g01813 1107 Gene3D - 145 205 - -
Car03g01813 1107 SUPERFAMILY TRCF domain-like 666 813 IPR037235 -
Car03g01813 1107 SMART helicmild6 494 578 IPR001650 -
Car03g01813 1107 SMART CarD_TRCF_2 141 243 IPR003711 -
Car03g01813 1107 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 592 IPR027417 -
Car03g01813 1107 SMART ultradead3 266 458 IPR014001 -
Car03g01813 1107 Pfam CarD-like/TRCF domain 142 242 IPR003711 -
Car03g01813 1107 Pfam DEAD/DEAH box helicase 292 430 IPR011545 GO:0003676|GO:0005524
Car03g01813 1107 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 472 622 IPR001650 -
Car03g01813 1107 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 50 794 - -
Car03g01813 1107 PANTHER TRANSCRIPTION-REPAIR-COUPLING FACTOR 50 794 - -
Car03g01813 1107 Gene3D - 206 449 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01813 Car-Chr3 64229403 64243393 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01813 - - gmx:100805206 1325.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01813 03 64229403 64243393 Car03g01813 03 64229403 64243393 ECH