Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00999 ATGACTACACAACGTTCTCATGTTCCAAAGTTTGGCAATTGGGATGGCCAAGACGATGTTCCTTATACAGCTTATTTTGACAAAGCCCGGAAAACTCGACCTGGCACCAAAATGATTAATCCAAATGACCCTGAAGAAAATTCAGATTTAGTTCTTCAAAATTCATCTTCTGATGCCGACATAATTCATCCAAAACCCAAAGTTTATTCAGAGAATCAATCCGAAAAAGGATCAGTGAGATCAACACATAATGAGTTACAAAAGAGCAAGGAGGATGGTGATCTTAAGAATTTTGTTAACTCACCAGCTCGTCATGACAATCTAAGCAACAGGAGTGCTGGTGATTCCGCCTCTCGTCCTGGAAGCCATGGAGTAGGTTCTGCTGACACCTACAGAAGACCTTTAAAACAAAGTACTGGCTCAGAGTACAGCATTGAACGGTCACCCCTTCATCGCCAGGCTAAAACCCCTGGTAGAGATAGTCCTTCTTGGGAAAGAAAAAGTTCATACGATAGCAGTCATGGTACACCAGGAAGATCCCGATTGAGACCAGCCAATCGAGGGGATGAAACTCCTGATAAAAGTGCTGCTGTTCCGAAATTTGGTGAGTGGGATGAGAGTGACCCTACATCAGCTGATGGCTATACTCACATTTTCAACAAAGTGCGGGAGGAGAAACACGTTGCAGCTGGAAATGCGCCAGGTACACCAAATGGAAGATCATACGTTATCCGAAACCAACCTGCCAATGACAAAACTCAGGGTTGCTGCTTTTTCTGGGGCAGAAAATGA 792 0.4394 MTTQRSHVPKFGNWDGQDDVPYTAYFDKARKTRPGTKMINPNDPEENSDLVLQNSSSDADIIHPKPKVYSENQSEKGSVRSTHNELQKSKEDGDLKNFVNSPARHDNLSNRSAGDSASRPGSHGVGSADTYRRPLKQSTGSEYSIERSPLHRQAKTPGRDSPSWERKSSYDSSHGTPGRSRLRPANRGDETPDKSAAVPKFGEWDESDPTSADGYTHIFNKVREEKHVAAGNAPGTPNGRSYVIRNQPANDKTQGCCFFWGRK 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00999 263 PANTHER RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE-RELATED 3 260 - -
Car03g00999 263 MobiDBLite consensus disorder prediction 81 99 - -
Car03g00999 263 MobiDBLite consensus disorder prediction 102 117 - -
Car03g00999 263 MobiDBLite consensus disorder prediction 41 60 - -
Car03g00999 263 MobiDBLite consensus disorder prediction 228 247 - -
Car03g00999 263 MobiDBLite consensus disorder prediction 1 213 - -
Car03g00999 263 MobiDBLite consensus disorder prediction 132 146 - -
Car03g00999 263 MobiDBLite consensus disorder prediction 183 201 - -
Car03g00999 263 MobiDBLite consensus disorder prediction 148 167 - -
Car03g00999 263 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 3 260 IPR040387 -
Car03g00999 263 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 192 227 IPR008700 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00999 Car-Chr3 50371166 50376862 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00999 K13456 - gmx:100499220 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g00999 03 50371166 50376862 Car07g03206 07 59699377 59703597 PCT