Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00946 ATGTCTAGTCATTGGGGTATTATAGTTTCAGATCCATGGCTTCAAAACCAGTTCACACAAGTTGAACTTCGCAGCTTAAAATCACAATTCATGAGCATGAGGAGAGAGAGTGGAAGGCTTACCATTGGAGACTTATCTTCCAAGATGTCAACGTTGAAAGTTGTGGGAGAAAATCTGAGTGAAGAAGAAAGAGATTCTTATATCCATGATTTGTATCAAAACACAGATGAAGATGTTGATTTTGAATTGTTTCTCAAGGTTTACTTGAAACTACAAACTTTTGCAAGTTCTAGAACAGGAAACAATGCAAAAAATTCATCAGCATTCCTCAAAGTTGCAACTACAACATTGCTTCACACAATAAGTGAATCAGAGAAGGCATCATATGTTACACATATAAATAACTATCTTGCAGAAGATGAATTCATCAGCAAATACCTTCCTCTTGATACTTCAACCAATGACCTTTTCGAAATCGCAAAAGATGGTGTTCTTCTTTGTAAGCTCATTAATGTGGCGGTTCCAAGGACTATCGATGAACGTGCGATCAACACAAAAAGATTACTTAATCCATGGGAAAGGAATGAAAATCACACACTATGCCTTAACTCTGCTAAAGCAATTGGATGTACTGTAGTCAACATTGGCACTCAAGACTTAATTGAAGGAAGGCGGCATCTGGTGCTTGGATTGATTTCACAAATTATTAAGATACAATTATTGGCGAATTTGAACCTAAAGAAAACTCCTCAACTCTTGGAGTTGGTTGATGATAGTAAGGATATGGAAGAGTTGATGAGCCTACCACCAGAAAAAATCTTGTTGAGGTGGATGAATTTCCATTTGAAGAAAACAATATATAAGAAGATTGTCACAAACTTCTCCTCTGATGTTAAGGATGCAGAAGCTTATGCTCATCTTCTAAATGTTCTTGCACCTGAATACACAAATCCATCCACATTGGCGATAAAAAATCCTTTCGAACGCGCAAAGCTAGTTCTCGAACACACCGATAAAATGGGCTGCAAGCGATACTTAACTGCAAGAGATATAGTAGAAGGTTCTCCAAATCTTAACCTTGCTTTTGTTGCACATATTTTCCAACTCAGGAATGGACTTTCAACACAAGCAAAACAGAGTTCTCTCCTTGAATCATTACTAGATGATACTCAAGATTCAAGAGAAGAAAGAGTTTTTCGCCTTTGGATTAATAGTCTTGGCAATTCAACATATATCAACAATGTTTTTGAGGATGTTAGAAATGGTTGGGTACTTTTGGAGACTCTTGACAAAGTGTCACCTGGGATTGTTAATTGGAAGATTGCAAACAAGCCTCCCATAAAGATGCCATTTAAAAAAGTTGAGAATTGCAACCAAGTTGTGAAAATTGGGAAACAGCTTAAGTTTTCCCTAGTAAATATTGCTGGAAATGACATTGTGCAAGGATATAAAAAATTAATACTAGCATATTTGTGGCAATTGATGAGATGCAATATCCTACAACTTCTAAAGAACTTGAGATTTCACTCTCATGGGAAGGAAATTACTGATGCTCATATTTTGCAATGGGCTAACACCAAAGTCAGAAGCTCAGGAAGCCAAAGTCATATATATAGTTTCAAGGATAAAAGTTTATCAGATGGAATATTTTTCCTGGAGCTCCTTAGTTCTGTGCAACCAAGAGCTGTGAATTGGGGTCTTGTAACAAAAGGAGTCACAGATCAGGAGAAAATGATGAATGCAACCTACATTATCAGTATTGCAAGAAAGCTTGGATGTTCAATTTTCTTGCTTCCTGAAGACATCACTGAGGTAAATCAAAAGATGATACTTACACTAACGGCAAGTATAATGTATTGGTTCTTAAAACACCCTGTTGAAGAAAAGACAGTAGGAAATTCAGACAGTGAGAGTCAAGTGGAGACTATATCAAATTCAACATTGGATGATTCTGCTTCTGATTTTTCAGCAGAAGACAACATGTAA 1986 0.3656 MSSHWGIIVSDPWLQNQFTQVELRSLKSQFMSMRRESGRLTIGDLSSKMSTLKVVGENLSEEERDSYIHDLYQNTDEDVDFELFLKVYLKLQTFASSRTGNNAKNSSAFLKVATTTLLHTISESEKASYVTHINNYLAEDEFISKYLPLDTSTNDLFEIAKDGVLLCKLINVAVPRTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDLIEGRRHLVLGLISQIIKIQLLANLNLKKTPQLLELVDDSKDMEELMSLPPEKILLRWMNFHLKKTIYKKIVTNFSSDVKDAEAYAHLLNVLAPEYTNPSTLAIKNPFERAKLVLEHTDKMGCKRYLTARDIVEGSPNLNLAFVAHIFQLRNGLSTQAKQSSLLESLLDDTQDSREERVFRLWINSLGNSTYINNVFEDVRNGWVLLETLDKVSPGIVNWKIANKPPIKMPFKKVENCNQVVKIGKQLKFSLVNIAGNDIVQGYKKLILAYLWQLMRCNILQLLKNLRFHSHGKEITDAHILQWANTKVRSSGSQSHIYSFKDKSLSDGIFFLELLSSVQPRAVNWGLVTKGVTDQEKMMNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLKHPVEEKTVGNSDSESQVETISNSTLDDSASDFSAEDNM 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00946 661 MobiDBLite consensus disorder prediction 632 661 - -
Car03g00946 661 Gene3D - 246 374 IPR036872 -
Car03g00946 661 ProSiteProfiles Calponin homology (CH) domain profile. 123 240 IPR001715 GO:0005515
Car03g00946 661 Gene3D - 12 91 - -
Car03g00946 661 SUPERFAMILY Calponin-homology domain, CH-domain 121 619 IPR036872 -
Car03g00946 661 Pfam Calponin homology (CH) domain 269 369 IPR001715 GO:0005515
Car03g00946 661 Pfam Calponin homology (CH) domain 395 497 IPR001715 GO:0005515
Car03g00946 661 Pfam Calponin homology (CH) domain 146 238 IPR001715 GO:0005515
Car03g00946 661 Pfam Calponin homology (CH) domain 518 621 IPR001715 GO:0005515
Car03g00946 661 Gene3D - 507 619 IPR036872 -
Car03g00946 661 SUPERFAMILY EF-hand 14 95 IPR011992 -
Car03g00946 661 MobiDBLite consensus disorder prediction 631 661 - -
Car03g00946 661 ProSiteProfiles Calponin homology (CH) domain profile. 268 371 IPR001715 GO:0005515
Car03g00946 661 ProSitePatterns Actinin-type actin-binding domain signature 2. 212 236 IPR001589 -
Car03g00946 661 CDD CH 124 238 IPR001715 GO:0005515
Car03g00946 661 CDD CH 394 496 IPR001715 GO:0005515
Car03g00946 661 CDD CH 269 369 IPR001715 GO:0005515
Car03g00946 661 ProSiteProfiles Calponin homology (CH) domain profile. 514 622 IPR001715 GO:0005515
Car03g00946 661 ProSiteProfiles Calponin homology (CH) domain profile. 393 499 IPR001715 GO:0005515
Car03g00946 661 PANTHER ACTIN-BINDING CALPONIN-LIKE (CH) DOMAIN PROTEIN 1 660 - -
Car03g00946 661 SMART ch_5 516 620 IPR001715 GO:0005515
Car03g00946 661 SMART ch_5 270 369 IPR001715 GO:0005515
Car03g00946 661 SMART ch_5 125 238 IPR001715 GO:0005515
Car03g00946 661 SMART ch_5 395 497 IPR001715 GO:0005515
Car03g00946 661 CDD CH 520 622 IPR001715 GO:0005515
Car03g00946 661 Gene3D - 389 506 IPR036872 -
Car03g00946 661 PANTHER FIMBRIN/PLASTIN 1 660 IPR039959 GO:0051015|GO:0051017
Car03g00946 661 Gene3D - 119 245 IPR036872 -
Car03g00946 661 ProSitePatterns Actinin-type actin-binding domain signature 1. 395 404 IPR001589 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00946 Car-Chr3 49294090 49304749 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00946 1 624 EF-hand Containing Proteins AT5G55400 66.134 0.0 868
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00946 - - gmx:100805133 1193.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g00946 03 49294090 49304749 Car07g03259 07 60177733 60183959 PCT