Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00551 ATGATCGTGTCATCACTCATCAACGAGCATTTCGCCGCAAGCCGATTATTATCCTCATTCGCTCTTTCCCCTTTCGGTAACCTCACTCACGCTTCCACAATCTTCTCTTCCATTCACCGACCCAATTCTTTCATGTGGAACACTCTCATCCGCGCTCAACAAAAACAACCCATAAACGCTCTCTCTCTTTATATATCCATGCGTAGGCATTGCGTTTTACCAGGTAAACACACTTTCCCTTTTCTCCTCAAAGCATGTTCTTCACTCTCGCAACCATTATTACCTTGTAAACAGGTTCACGCACACGTGGTTAAATTTGGGTTGCACTTAGATTGCCACGTGGGTAATGGTTTGGTTCGTTGTTATTCTGTTTCGGATGATTTGATTGATGCACGGTACGTGTTTGATGAAATTCCTAACAGAAATTTGAGTCTTTGGACAACGATGATTTGTGGGTATGCGCAGAATTTTTGTTATAATGAGGCTTTGGGTCTTTTTGAGAGGATGGTTGTTGATGGGTTTGAGCCTAATGGGGCGACGCTGGCTTCGGTTTTGTCAGCTTGTGCTCGTTCGGGTTGTCTTGAGCTTGGGGAAAGGATTCACGAGTTTATGAGAGTGAAACGGGTTGAAGTTGGAGTGATTCTTGGGACGGCGTTGGTTTATATGTATGCCAAGAATGGGGCGATTTTGATGGCGAGGAAGTTGTTTGATGAAATGCCTGAGAAGAATGTTGTTACTTGGAATGCTATTATATGTGGTTTGGCTTCTCATGGGCTTGTTGATGATGCTCTTAGTTTATTTGAGAGTATGAAGAAGGATGGGATTGTTGTTCCTAATGATGTCACATTCATTGGGGTTTTGTCGGCTTGTTGTCATGCTGGTTTGATTGATGTCGGTCGTGAGGTTTTTTGTTCGATGAAGGTTGTGTATGGAATTGAACCAAAGATTGAGCATTATGGATGCATAGTTGATCTTCTTGGGAGAGGAGGTAAGTTGCTCGAGGCAGAGGAATTGATAAAAGGGATGCCGTTGAAACCTGATGTGGTTATTTTGGGAGCTTTGTTGGCAGCTTGCAAGAATAATGGACATACTGAGGTTGCTGAAAGAGTGGTGAAAGAAATTCTTACTCTGGAACCTCATAATCACGGAGTTCATGTTTCTTTGTCGAATATGTATGCAGAAGCTGGACAATGGCAGGAAGTATTGAGACTGAGGAAGATGATGAAAGAAGAGAAACTTAAGAAAGCTCCAGGATGGAGCCTCGTTGCGACTTAA 1275 0.4298 MIVSSLINEHFAASRLLSSFALSPFGNLTHASTIFSSIHRPNSFMWNTLIRAQQKQPINALSLYISMRRHCVLPGKHTFPFLLKACSSLSQPLLPCKQVHAHVVKFGLHLDCHVGNGLVRCYSVSDDLIDARYVFDEIPNRNLSLWTTMICGYAQNFCYNEALGLFERMVVDGFEPNGATLASVLSACARSGCLELGERIHEFMRVKRVEVGVILGTALVYMYAKNGAILMARKLFDEMPEKNVVTWNAIICGLASHGLVDDALSLFESMKKDGIVVPNDVTFIGVLSACCHAGLIDVGREVFCSMKVVYGIEPKIEHYGCIVDLLGRGGKLLEAEELIKGMPLKPDVVILGALLAACKNNGHTEVAERVVKEILTLEPHNHGVHVSLSNMYAEAGQWQEVLRLRKMMKEEKLKKAPGWSLVAT 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00551 424 Pfam PPR repeat family 242 292 IPR002885 -
Car03g00551 424 Pfam PPR repeat family 142 190 IPR002885 -
Car03g00551 424 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Car03g00551 424 PANTHER OS11G0483950 PROTEIN 1 423 - -
Car03g00551 424 TIGRFAM PPR: pentatricopeptide repeat domain 145 177 IPR002885 -
Car03g00551 424 TIGRFAM PPR: pentatricopeptide repeat domain 245 279 IPR002885 -
Car03g00551 424 TIGRFAM PPR: pentatricopeptide repeat domain 281 314 IPR002885 -
Car03g00551 424 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 176 IPR002885 -
Car03g00551 424 Pfam E motif 364 422 IPR046848 -
Car03g00551 424 Pfam PPR repeat 318 342 IPR002885 -
Car03g00551 424 SUPERFAMILY TPR-like 222 405 IPR011990 GO:0005515
Car03g00551 424 Gene3D Tetratricopeptide repeat domain 306 380 IPR011990 GO:0005515
Car03g00551 424 Gene3D Tetratricopeptide repeat domain 97 193 IPR011990 GO:0005515
Car03g00551 424 Gene3D Tetratricopeptide repeat domain 7 96 IPR011990 GO:0005515
Car03g00551 424 Gene3D Tetratricopeptide repeat domain 194 305 IPR011990 GO:0005515
Car03g00551 424 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00551 Car-Chr3 25402788 25405182 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00551 23 422 Glycoside Hydrolase AT3G49170 33.663 1.44e-70 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00551 - - mtr:MTR_7g033400 724.931