Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00541 ATGACTAATAAAAAAGCATTACCAGTCTCAAATTTTGGTAGTGACTTTTGCAATTGTCACAATAATTCTCCATCGGAAAAGATGAGAATTTTGGAGTTGTTATCATTATCACCCTCTGATGGCAATGGTTCCTCAGTAGAAGAACCTTTACCTCAGGATGCAGATTATACGGTTAGTCTCAGCGATGAACTCGAGACATCGATCTTGGCTCGATTCCCGAGATCACTACACTGGAAACTTTGCTTTCTAAACAAGAGATTCTTGACTTTAATGAAAAGTGGTGAGATCTACAAAATAAGAAAAGAGTTAGGACTCAAAGAGCCATCAGTTTTTATGTTAGCTAGCGGGGAAAGCAATTGGTGGGGTATGGATTGGCCTTTCAAGTCTAGCAGGAAACTACCTAGGATTCAATCAGATTATAGCTTTGAGTTTGGTGATAAAGAATCGTTTTCCGCAGGGTCTGATTTATTGGTTTCGGGTAAAGAAATCGATGGAGCTGTTATTTGGAGATACGATTCGGAAACTAATGAATGGTTAAAAGGGCCATTCATGATTAATCCAAGGTGTCTTTTTGCTTCAGCTAGCTCTGGTGATTTTGCTTTCGTTGCTGGTGGTTTAGAGACAAACACTTATAGCAAAGTATTGGATACTGCTGAGAAATACGACTCAAAACGAAAAACTTGGGAGACTTTGCCGAAGATGAATCAAAAGAGGAAATTTTGTTCAGGTTGTTTCATGGACAAGAGATTTTATGTTATAGGTGGACAGGACGAGAATCAAAAGGATCTAACTTGTGGCGAGTTTTTCGATGAAAAGACGAAGACATGGAATTTGGTTCCTGATATGTTGAAGGATATTCCTCTTTCGGTTTCACAGTCTCCGCCTCTAATTGCTGTTGTGAATAATGAGCTTTATTCACTTGATGCTTCTTTTAATGAGTTGAAAGTGTATGTTAAAGGAAGTAATAAGTGGAAAAAGTTAGGTGTTGTTCCTGTGAGAGCTGATGTACAAGGTGGTTGGGGTGTTGCTTTTAAATCACTTGGTGATGAGTTACTTGTTATTGGTGCACCTTCTGTTTCAATTAAAGAAAGTGGTTTGGCTATTTATACTTGTTGTCCTGATCCTGAGTGTGAGAAATTGATTTGGAAGCAAATTGAATGTGGGAGTGTTCAGCTTAATCATTTCATTAGGAACTGTGCTGTCATGATGGGAAGTTGA 1218 0.3842 MTNKKALPVSNFGSDFCNCHNNSPSEKMRILELLSLSPSDGNGSSVEEPLPQDADYTVSLSDELETSILARFPRSLHWKLCFLNKRFLTLMKSGEIYKIRKELGLKEPSVFMLASGESNWWGMDWPFKSSRKLPRIQSDYSFEFGDKESFSAGSDLLVSGKEIDGAVIWRYDSETNEWLKGPFMINPRCLFASASSGDFAFVAGGLETNTYSKVLDTAEKYDSKRKTWETLPKMNQKRKFCSGCFMDKRFYVIGGQDENQKDLTCGEFFDEKTKTWNLVPDMLKDIPLSVSQSPPLIAVVNNELYSLDASFNELKVYVKGSNKWKKLGVVPVRADVQGGWGVAFKSLGDELLVIGAPSVSIKESGLAIYTCCPDPECEKLIWKQIECGSVQLNHFIRNCAVMMGS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00541 405 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 1 403 - -
Car03g00541 405 SMART kelc_smart 163 198 IPR006652 GO:0005515
Car03g00541 405 SMART kelc_smart 249 302 IPR006652 GO:0005515
Car03g00541 405 SMART kelc_smart 201 248 IPR006652 GO:0005515
Car03g00541 405 SUPERFAMILY Kelch motif 151 357 IPR015915 GO:0005515
Car03g00541 405 Pfam Kelch motif 238 282 IPR006652 GO:0005515
Car03g00541 405 Pfam Kelch motif 187 235 IPR006652 GO:0005515
Car03g00541 405 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 1 403 - -
Car03g00541 405 Gene3D - 116 384 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00541 Car-Chr3 24322326 24325295 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00541 60 279 Miscellaneous Gene Families AT4G33900 26.667 9.27e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00541 - - aprc:113863834 630.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g00541 03 24322326 24325295 Car03g00541 03 24322326 24325295 ECH