Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00539 ATGGCTATCTCAACCTCCTTCTCCAACTTTTTTTCATTCCTCTCACCACAATCAAACCCCCAACAACAAAAACCACACCCCCCACTTCTCTATCCATTTCCATCTAATCCCAACCACCGCAGCAAGTTGGTTCCACTCGTTCTCAGCCGTGATGAACGCTCTTCATCGATTTCAACATCACCACCACCAGACTCCATGTCCTCCGTTGTTACCTCATCTCTCTCAGTTTCCAACTCCATGTTCTTAGCATCGCCGTATAATGTTCAAGTTATTGTTGAAGATGATGAGCCTGAAGAGAGGTTGCTTAATAGGTTTCGAAGAGAGGTTATGAGGGCTGGGATTATTCAAGAGTGTAAGAGAAGAAAGTTTCATGAGAATAAACAAGACAAGAAGAAGCGTAAGGTTCGTGAAGCTGCTAAGCGTAATCGTAGAAACAGATTTCCCAGGCGAGATATGGGGAAATCTCCAAGAGGACCGTACAACAACTACAGGCAGGATGTTCCAAAACCTGAGAAGGAAGAGGATGATGATAACTGGGATCTACCTGAAGAGGATGTGCTAAATTTTTGA 570 0.4404 MAISTSFSNFFSFLSPQSNPQQQKPHPPLLYPFPSNPNHRSKLVPLVLSRDERSSSISTSPPPDSMSSVVTSSLSVSNSMFLASPYNVQVIVEDDEPEERLLNRFRREVMRAGIIQECKRRKFHENKQDKKKRKVREAAKRNRRNRFPRRDMGKSPRGPYNNYRQDVPKPEKEEDDDNWDLPEEDVLNF 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00539 189 TIGRFAM S21p: ribosomal protein bS21 88 144 IPR001911 GO:0003735|GO:0005840|GO:0006412
Car03g00539 189 Hamap 30S ribosomal protein S21 [rpsU]. 87 143 IPR001911 GO:0003735|GO:0005840|GO:0006412
Car03g00539 189 MobiDBLite consensus disorder prediction 124 189 - -
Car03g00539 189 MobiDBLite consensus disorder prediction 125 150 - -
Car03g00539 189 MobiDBLite consensus disorder prediction 51 70 - -
Car03g00539 189 Gene3D Ribosomal protein S8 102 140 IPR038380 -
Car03g00539 189 PANTHER PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED 1 186 - -
Car03g00539 189 MobiDBLite consensus disorder prediction 14 70 - -
Car03g00539 189 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 1 186 IPR001911 GO:0003735|GO:0005840|GO:0006412
Car03g00539 189 Pfam Ribosomal protein S21 89 143 IPR001911 GO:0003735|GO:0005840|GO:0006412
Car03g00539 189 PRINTS Ribosomal protein S21 family signature 91 99 IPR001911 GO:0003735|GO:0005840|GO:0006412
Car03g00539 189 PRINTS Ribosomal protein S21 family signature 99 108 IPR001911 GO:0003735|GO:0005840|GO:0006412
Car03g00539 189 PRINTS Ribosomal protein S21 family signature 111 121 IPR001911 GO:0003735|GO:0005840|GO:0006412
Car03g00539 189 PRINTS Ribosomal protein S21 family signature 123 133 IPR001911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00539 Car-Chr3 23469742 23472496 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00539 - - mtr:MTR_7g029325 178.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g00539 03 23469742 23472496 Car03g00539 03 23469742 23472496 ECH