Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g02171 ATGACTGTGGGGGCAGGAATATCTATTGCTGATGGTAACTTGATGGTGTTGGGAAAGAAGGTTCTGAGTCATGTTCATGACAATGTCCTTGTTACCTCTGCTTCTGGTGGTTCATTGCTCAATGGTGCATTTCTTGGTGTTTCATCTCATCAAAAGGGTAGTCGAAGTGTTTTTCCCATTGGCAAGCTTGAGGGTTTAAGATTTATGAGCCTTTTTCGGTTCAAAATGTGGTGGATGACACAGAGAATGGGTACTTGTGGACAAGAAATTCCCATTGAGACACAGTTTTTGCTTATTGAAGCACACAAGGGTTGTGATATTGATGGAGGGATCAACAATGGAGAAGAAGATCAAGCTGGTTCTACCTACGCGGTTATTTTACCTCTTTTGGAAGGTGATTTCAGAGCAGTTCTCCAAGGAAACGATCTAAATGAAATTGAGATTTGTGTGGAAAGTGGATGTCCTGATGTGGAGGAATTTGATGGAACTCATCTTGTGTTCATTGGGGCTGGATCAGATCCTTATGAAGTTATAACAAATGCTGTCAAGACTGTTGAGAGACACTTGAAGACATTTTGTCATCGCGAGCGAAAGAAGATGCCAGATATGCTGAACTGGTTTGGGTGGTGTACATGGGATGCTTTCTATACCAATGTCACTTCAGAGAATGTGAAGCAAGGATTACACAGttttGAGGAAGGTGGAATTCCTGCTAAGTTTGTCATAATTGATGATGGATGGCAATCTGTTAGCATGGATCCCAATGGTATTGAATGGAAAGCTGATTGTGCAGCCAACTTTGCAAATCGCTTAACTCATATAAAAGAGAATCACAAATTCCAGAAGGATGGCAAGGAAGGTCACAGGAATGAGGACCCTGCCAAGGGACTTCAACATATTACCAATGAAATAAAAAAAGAACATGCCATAAAGCACGTGTATGTGTGGCATGCGATAACAGGATATTGGGGTGGTGTTAAACCTGATACTAATGGCATGGAACACTATGAGTCAAAGATGACATTCCCTATCTCATCTCCTGGAGTCAAGTCCAATCAACCAGATGAAGCTTTAGATACCATTGCAATAAATGGACTTGGCCTTGTGAATCCTGAGAAAGTGTTTCACTTTTATGATGAACTCCACTCATATCTAGCATCTGCTGGTATTGATGGTGTCAAAGTTGATGTTCAGAATATCCTTGAAACTCTCGGGGCAGGACACGGTGGACGAGTGAAACTCGCAAGGAAATACCACCAGGCCTTGGAGGCATCAATCTCAAGGAACTTTCCTGATAATGGAATCATTTGTTGCATGAGTCACAATACAGATGGATTGTATAGTGCAAAGCGCTCAGCTATTATTAGAGCATCAGATGATTTCTGGCCCAGAGATCCTGCATCCCACACAATTCACATTGCATCAGTTGCATACAATACTATTTTCCTCGGCGAATTTATGCAGCCAGATTGGGACATGTTTCATAGCCTACATCCAATGGCTGAATATCATGCTGCTGCAAGAGCAATTGGAGGATGTCCTATTTATGTCAGTGACAAGCCTGGACACCATGACTTTAATTTGTTAAAGAAGCTTGTACTTCCTGATGGTTCTATATTAAGAGCTAAACTTCCAGGAAGACCAACCAAGGATTGTTTATTTGCTGATCCTGCTAGAGATGGAAAAAGTCTTCTAAAGATATGGAACATGAATGACTTTTCCGGAGTTGTTGGTGTATTCAATTGCCAAGGAGCTGGGTGGTGCAAAGTTGAAAAGAAGAACCTTATCCACGACAAGAATCCAGGCATGGTCACTGGCGTCGTTTGGGCTAAAGATGTTGATCATTTATCTGCGGCTGCAGATGATAAATGGAAAGGAGACACAGTTATATTTTCGCATCTTTGTGGCGAATTAGTCTACCTTCCAAAGGATGTTTCTATCTCAGTTACTTTGAAATTGCGAGAATATGAAGTTTTTACATTAGTCCCTGTGAAGGAATTACCAAATGGTGTCAAATTTGCTCCTATTGGTTTAATCAAGATGTTCAATTCAGGAGGAGCTGTCAAAGAGTTCAGCTATGGACCAAATGGAAGTGAAAATGTCACCATGAAAGTGCGCGGATGTGGCCAATTCGGTGCTTATTCATCGGCTCGGCCCAAGTTGATTACTGTTGATTCAGAAGAGAGAAAGAGTTATACCAATGGAGCATTTCTATTGATTTATAAATCAAAAAATATTTTAGTTAAATTTCAAGTTGATGAAATTGATGATACATGGCATGGAGAAGAAGATCAAGCTGGTTCTACCTACACGGTTATTTTACCTCTTTTGGAAGGTAATTTCAGAGCAGTTCTTCAAGGGAATGATCTAAATGAAATTGAGACATGTGTGGAAAGTGTACTATGCAGGGATTGTTGGAAGATATCCAAAGATATGCGGGGGCATGGCGTCGAGCACAAGAAGAACAGAAAGTGA 2475 0.4093 MTVGAGISIADGNLMVLGKKVLSHVHDNVLVTSASGGSLLNGAFLGVSSHQKGSRSVFPIGKLEGLRFMSLFRFKMWWMTQRMGTCGQEIPIETQFLLIEAHKGCDIDGGINNGEEDQAGSTYAVILPLLEGDFRAVLQGNDLNEIEICVESGCPDVEEFDGTHLVFIGAGSDPYEVITNAVKTVERHLKTFCHRERKKMPDMLNWFGWCTWDAFYTNVTSENVKQGLHSFEEGGIPAKFVIIDDGWQSVSMDPNGIEWKADCAANFANRLTHIKENHKFQKDGKEGHRNEDPAKGLQHITNEIKKEHAIKHVYVWHAITGYWGGVKPDTNGMEHYESKMTFPISSPGVKSNQPDEALDTIAINGLGLVNPEKVFHFYDELHSYLASAGIDGVKVDVQNILETLGAGHGGRVKLARKYHQALEASISRNFPDNGIICCMSHNTDGLYSAKRSAIIRASDDFWPRDPASHTIHIASVAYNTIFLGEFMQPDWDMFHSLHPMAEYHAAARAIGGCPIYVSDKPGHHDFNLLKKLVLPDGSILRAKLPGRPTKDCLFADPARDGKSLLKIWNMNDFSGVVGVFNCQGAGWCKVEKKNLIHDKNPGMVTGVVWAKDVDHLSAAADDKWKGDTVIFSHLCGELVYLPKDVSISVTLKLREYEVFTLVPVKELPNGVKFAPIGLIKMFNSGGAVKEFSYGPNGSENVTMKVRGCGQFGAYSSARPKLITVDSEERKSYTNGAFLLIYKSKNILVKFQVDEIDDTWHGEEDQAGSTYTVILPLLEGNFRAVLQGNDLNEIETCVESVLCRDCWKISKDMRGHGVEHKKNRK 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g02171 824 Pfam Raffinose synthase or seed imbibition protein Sip1 760 799 IPR008811 -
Car02g02171 824 Pfam Raffinose synthase or seed imbibition protein Sip1 7 729 IPR008811 -
Car02g02171 824 Gene3D Aldolase class I 203 532 IPR013785 -
Car02g02171 824 PANTHER - 1 736 IPR008811 -
Car02g02171 824 PANTHER - 755 799 IPR008811 -
Car02g02171 824 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 1-RELATED 755 799 - -
Car02g02171 824 SUPERFAMILY (Trans)glycosidases 201 532 IPR017853 -
Car02g02171 824 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 1-RELATED 1 736 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g02171 Car-Chr2 51916111 51922359 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g02171 761 799 Glycoside Hydrolase AT1G55740 64.103 7.02e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g02171 K06617 - gmx:100785506 1330.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g02171 02 51916111 51922359 Car02g02171 02 51916111 51922359 ECH