Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g02145 ATGGCGAAACTTGTCTACATGGCTTTACCTTTACTCGCAAAACCTCACAAAACCATAGCCtcttcttcttcttcttcAGAGTCATTGAAGCTTCCCCACAGAACACGCAAAACCAACATCTCCATTCCCACTTCTACCAAAGTTACTACTAACCGTTCTGTAAAACCCCAGAAGCTTAATTCAGATATTTCTCCTCACAGAGCTGTGTCAGCTGTGAGACTAATGAGGATTGAACTTGGTGGTGCTTTTGCTGACCTTCTCAATGAGAAAGGGAAAGGTTCTGGTGAAAATGAGATGGGTTATGTTCAAAGAACGCTTGGATTTCGTACTCGAGAATTAAATCATCAAGACCTTAGATTGGTTACAGACATTGTTGGAGGCACAATTCGTTGGAGACGATATCTTGATCATCTGATCAGTTCATTGTGTCATGATAAAGATATATCTAGTATGGAGCCTCTTCTCTTACAGATTCTACGAATTGGCTTCTATGAGATTGTCAAATTAGATATGCCCCCTTATGCTGTTGTAGATGAGAATGTGCAGCTTGCAAAAGCTGCTCTCAGGCCGGGTGCTGGCAACATGGTCAATGGAATCCTCCGAAAGCTAGTCATGCTTAAGGAAAATGAAACTCTTCCTTTGCCCAAAGTGGAGGGTGATGATCGTTCTCAAGCACGTGCTCTGGCAACTCTCTACTCACATCCAGTTTGGATGGTAAGGAGATGGACGAAGTATCTGGGCCAGGAAGAAGCCATTAAACTGATGATATGGAACAACAGTGAACCGAGTTATAGCTTAAGGGCTAATCGGGCAAAAGGTTTTTCAAGAGATGACCTTGTGACACAGCTTAATGTATTGAAGGTCCCACACCAGCTTTCATTGCATTTGGATGACTTTGTTCGCATCAAAACTGGATTGCAGACGGTCATTCATGCCGGCCTACTCAAAGAGGGTTTATGTTCAGTTCAGGATGAGAGTGCAGGTCTTGTAGTTTCTATTGTGGATCCTCAACCCGGTGAAACCATCGTTGATTGTTGTGCTGCTCCTGGTGGAAAGACCCTCTACATGGCCTCTCATTTAAGTGGACAAGGTATGGTGTTTGCAGTTGATGTAAATCGTGGTAGGTTGAGAATTCTTAAAGAGACAGCAAAGTTGCACCAAGTAGATGGTGTCGTTACCACCATCCATGCCGATCTTCGTACATTAACTGACGGTGAACCACTTAAGAGTAACAAAGTTTTGTTGGACGCACCATGCTCAGGACTTGGAGTTCTTTCAAAGAGAGCGGACTTACGTTGGAACAAGAAGCTGGAGGATATAGAACAATTGAAGATATTACAGGATGAACTCCTCGATGCAGCATCCACGTAA 1371 0.4303 MAKLVYMALPLLAKPHKTIASSSSSSESLKLPHRTRKTNISIPTSTKVTTNRSVKPQKLNSDISPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELNHQDLRLVTDIVGGTIRWRRYLDHLISSLCHDKDISSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVQLAKAALRPGAGNMVNGILRKLVMLKENETLPLPKVEGDDRSQARALATLYSHPVWMVRRWTKYLGQEEAIKLMIWNNSEPSYSLRANRAKGFSRDDLVTQLNVLKVPHQLSLHLDDFVRIKTGLQTVIHAGLLKEGLCSVQDESAGLVVSIVDPQPGETIVDCCAAPGGKTLYMASHLSGQGMVFAVDVNRGRLRILKETAKLHQVDGVVTTIHADLRTLTDGEPLKSNKVLLDAPCSGLGVLSKRADLRWNKKLEDIEQLKILQDELLDAAST 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g02145 456 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 34 456 IPR023267 GO:0001510
Car02g02145 456 Gene3D - 82 216 IPR035926 -
Car02g02145 456 CDD AdoMet_MTases 341 422 - -
Car02g02145 456 PANTHER NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN 34 456 - -
Car02g02145 456 Gene3D Sun protein; domain 3 221 327 - -
Car02g02145 456 PRINTS RNA (C5-cytosine) methyltransferase signature 411 423 IPR023267 GO:0001510
Car02g02145 456 PRINTS RNA (C5-cytosine) methyltransferase signature 343 353 IPR023267 GO:0001510
Car02g02145 456 PRINTS RNA (C5-cytosine) methyltransferase signature 314 328 IPR023267 GO:0001510
Car02g02145 456 PRINTS Viridiplantae FMU-related RCMT signature 72 95 IPR023268 -
Car02g02145 456 PRINTS Viridiplantae FMU-related RCMT signature 96 112 IPR023268 -
Car02g02145 456 PRINTS Viridiplantae FMU-related RCMT signature 211 224 IPR023268 -
Car02g02145 456 Pfam 16S rRNA methyltransferase RsmB/F 333 454 IPR001678 GO:0008168
Car02g02145 456 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 225 454 IPR029063 -
Car02g02145 456 Gene3D Vaccinia Virus protein VP39 328 456 IPR029063 -
Car02g02145 456 SUPERFAMILY NusB-like 103 238 IPR035926 -
Car02g02145 456 Pfam NusB family 98 204 IPR006027 GO:0003723|GO:0006355
Car02g02145 456 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 254 456 IPR001678 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g02145 Car-Chr2 51682281 51688521 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g02145 K03500 - gmx:100779327 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g02145 02 51682281 51688521 Car02g02145 02 51682281 51688521 ECH