Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01222 ATGAATATGAATATGCATCATGCCATGGTTTCATCTTTTCCTTCTTCATTAGTTGCTGCCACTGCAACTCTTAAGCTCCACCCACAATTCAGAAAACATTCACCAACCTCTTTTCCACTAGATAAGGGTCAAACCATTTCATTACAGAAAAGCCACACATTCACACATTTGGATCCCATAAGGCACCTTAATTTTCAAGAAGCACTTTCATTAGCAAAAGAGTGTCAAGAAAAAGTGGATTCATCTTTCTACATTCCCTTATTACAACAATGCCTAGAAAGTTGCTCCTTTTCAGCTACACAAATCATTCACTGTCACATAGTGAAAACAGGTAGCCATGAAGACCCTTTTACAACAACATTTCTTTTCAATGTTTATGCTAAATGTGGTAACATGGAAGAAGCTCAAAGAGTCTTTGATCACATGAAAATAAGAAATGTTGTTACTTGGACAAATTTAATGATGAGTTATGTGCAAAACTCAATGCCAAAAAATGCTATAAATTTGTTTCAAGAAATGTTGCATTCAGAGTGTTATCCTTCAATTTACACTTTTGCTATAGTACTTAATGCTTGTACAATTTTGCACTCATTGAAGTTAGGTGAACAGTTACATGGTTACATAATTAAATACCAAGTTGATTATGACACAAGCATTGGAAATGCACTTTGTAGTTTATACTCTAAATGTGGTAGATTGGAGTTTGGTCTAAAAGCATTTAAGAGAATCAAAGAAAAGAATGTTATTTCTTGGACTTCAGCTATTTCAGCTTGCGGCGAAAATGGCGAAGCTATGAAGGGTTTGAGACTTTTTGTTGAGATGCTTTTAGATGAGGTAAAGGTGCAGCCTAATGAGTATACTTTAACTAGTGTGTTGAGCCAGTGTTGTGAAGTTAAGTGCTTAGAGCTTGGTATTCAAGCTCATTCTTTCTGTATTAAATTTGGGTTTGAATCCAATTTGCGAGTTCGGAATTCTTTATTGTATTTGTACATTAAATGTGGTTATGTTGGTGAGGCTCAAAGATTGTTTAAAGCAATGGATGATATAAATTTGGTTACATGGAATGCTATGATTGCTGGTCATGGACAGATGATGGAACTTTCAAAGGATAATCTTTCTGCATACCAAAGTGGAATCGAAGCGCTAAAACTTTTCGCTAAGTTGAATCGGTCGGGCATGAAGCCTGATTCCTTTACATTCTCGAGTGCGTTGAGTGTTTGCAGTAGAATGATGGCTTTAGAACAAGGCGAACAGATTCACGCTCGGACGATTAAAACCGGGTTTTTATCAGAGGTTATTGTAGGTTCTTCTATGATTAATATGTATAACAAATGTGGAAGTATTGAGAGAGCAAGCAAAGTTTTTGTAGAGATGTCTATTAGAACAATGATATCATGGACTTCCATGATAACTGGTTTTGCACAGCATGGTTGGTCTAAGCAAGCTTTGCATCTTTTTGAGGATATGAAACTTGTAGGAGTTAGGCCAAACCAGATAACTTTTGTTGGCATTTTATCGGCTTGTGGAAGCGCTGGTATGGTCGATGATGCATTCGATTACTTCGAGATTATGCAGAAGGAGTATAAAATTAAACCTGTGATGGACCATTATGCTTGTTTGGTTGATATGTTAGTGAGGCTCGGTCGACTCGAGGAAGCTTTCGATTTTGTAAAGAAAATTATAAAGAAAATAGATCATGAGGCTTGTGAGTTTATTTGGTCAAACTTGCTTGCTGGTTGTATAAGCCAAGGGAATCTGGAATTGGGATGTAATGCTGCTGAACATTTACTAAGTCTCAAACCGAAAGATGCAGAAACGTATGTATTGCTGTTGAATACATACGTCTCGGCGGGGCGATCTGAGGATGTTTGTAGGGTGAAGAATATAATGAAAGAAGAGAAAGTTGAAAAGTTAAAGGATTGGAGTTGGATTAGCATCAAAGACAAAGTGTATTCATTTGAAACAAATGACAATGAAGAGGAGGAAAAGACATACTCTCCTACCATTTATCATAGTGAGAAGCTGGCCATTACATTTGGGTTGGAGAATTTGCCAAATTCTTCACCAATAAGAGTTGTCAAGAATACCTTAATGTGTAAGGATTGTCATAACTTTGTTAAGTACATCTCAACACTGACTAGTAGGGAAATCATTGTTAAAGATAGTAAGAGGATACATAAATTTTTCAATGGACAATGCTCGTGTGGGAATATTGGTGGTTACCATTTACCAATCAAGAGATGA 2244 0.3645 MNMNMHHAMVSSFPSSLVAATATLKLHPQFRKHSPTSFPLDKGQTISLQKSHTFTHLDPIRHLNFQEALSLAKECQEKVDSSFYIPLLQQCLESCSFSATQIIHCHIVKTGSHEDPFTTTFLFNVYAKCGNMEEAQRVFDHMKIRNVVTWTNLMMSYVQNSMPKNAINLFQEMLHSECYPSIYTFAIVLNACTILHSLKLGEQLHGYIIKYQVDYDTSIGNALCSLYSKCGRLEFGLKAFKRIKEKNVISWTSAISACGENGEAMKGLRLFVEMLLDEVKVQPNEYTLTSVLSQCCEVKCLELGIQAHSFCIKFGFESNLRVRNSLLYLYIKCGYVGEAQRLFKAMDDINLVTWNAMIAGHGQMMELSKDNLSAYQSGIEALKLFAKLNRSGMKPDSFTFSSALSVCSRMMALEQGEQIHARTIKTGFLSEVIVGSSMINMYNKCGSIERASKVFVEMSIRTMISWTSMITGFAQHGWSKQALHLFEDMKLVGVRPNQITFVGILSACGSAGMVDDAFDYFEIMQKEYKIKPVMDHYACLVDMLVRLGRLEEAFDFVKKIIKKIDHEACEFIWSNLLAGCISQGNLELGCNAAEHLLSLKPKDAETYVLLLNTYVSAGRSEDVCRVKNIMKEEKVEKLKDWSWISIKDKVYSFETNDNEEEEKTYSPTIYHSEKLAITFGLENLPNSSPIRVVKNTLMCKDCHNFVKYISTLTSREIIVKDSKRIHKFFNGQCSCGNIGGYHLPIKR 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01222 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
Car02g01222 747 PANTHER OS01G0913400 PROTEIN-RELATED 75 666 - -
Car02g01222 747 Pfam E motif 585 644 IPR046848 -
Car02g01222 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 115 145 IPR002885 -
Car02g01222 747 Pfam DYW family of nucleic acid deaminases 653 737 IPR032867 GO:0008270
Car02g01222 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Car02g01222 747 Gene3D Tetratricopeptide repeat domain 515 707 IPR011990 GO:0005515
Car02g01222 747 Gene3D Tetratricopeptide repeat domain 304 412 IPR011990 GO:0005515
Car02g01222 747 Pfam PPR repeat 436 458 IPR002885 -
Car02g01222 747 Pfam PPR repeat 225 248 IPR002885 -
Car02g01222 747 Pfam PPR repeat 537 563 IPR002885 -
Car02g01222 747 Pfam PPR repeat 249 275 IPR002885 -
Car02g01222 747 Pfam PPR repeat 324 348 IPR002885 -
Car02g01222 747 SUPERFAMILY TPR-like 534 619 IPR011990 GO:0005515
Car02g01222 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Car02g01222 747 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 75 666 - -
Car02g01222 747 Pfam PPR repeat family 464 508 IPR002885 -
Car02g01222 747 Pfam PPR repeat family 145 192 IPR002885 -
Car02g01222 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 603 637 IPR002885 -
Car02g01222 747 Gene3D Tetratricopeptide repeat domain 67 197 IPR011990 GO:0005515
Car02g01222 747 Gene3D Tetratricopeptide repeat domain 198 303 IPR011990 GO:0005515
Car02g01222 747 Gene3D Tetratricopeptide repeat domain 413 514 IPR011990 GO:0005515
Car02g01222 747 TIGRFAM PPR: pentatricopeptide repeat domain 464 497 IPR002885 -
Car02g01222 747 TIGRFAM PPR: pentatricopeptide repeat domain 499 532 IPR002885 -
Car02g01222 747 TIGRFAM PPR: pentatricopeptide repeat domain 148 181 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01222 Car-Chr2 36967121 36970001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01222 84 737 Glycoside Hydrolase AT3G49170 33.954 2.38e-128 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01222 - - mtr:MTR_5g067140 1203.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01222 02 36967121 36970001 Car02g01222 02 36967121 36970001 ECH