Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01220 ATGGCCATGGCTCTTCGCAAACTCTCCTTTTCCATCACCAACCCAACTTCACCTTTCACCAACACCACCACTTCTCTTTATCGCATGTCATCTTCACTCTCCGCTCAACAGAATCACAAATCTAATCCAGATTGGATTAAACAGCTTAACGATCCTCTTGAGGTTATAGATCCTGAGATCGAAGATATTATCGAACTCGAAAAAGCTCGTCAATGGAAGGGTTTAGAACTTATACCTTCAGAAAATTTTACGTCGTTGTCGGTGATGCAAGCGGTTGGATCGGTTATGACAAATAAATACAGTGAAGGTTATCCTGGTGCTAGATACTATGGTGGAAATGAGTACATTGATATGGCTGAGACTTTGTGTCAGAAGCGTGCATTGGAAGCTTTTCGGTTGGATCCTGCAAAATGGGGAGTCAATGTGCAGTCGTTATCTGGATCCCCTTCAAACTTCCAAGTTTACACTGCTTTGTTGAAACCTCATGAGAGAATTATGGCCCTCGATCTTCCCCATGGTGGGCATCTATCACATGGGTATCAGACTGACACCAAGAAGATATCAGCTGTATCTATATTCTTTGAAACGATGCCGTACAGATTGGACGAGAGCACTGGTTATATTGATTATGACCAGATGGAGAAAAGTGCTGCCCTTTTTAGGCCAAAACTAATAGTTGCTGGTGCTAGTGCTTATGCCCGCTTATATGATTATGCACGTATTCGCAAGGTATGTGATAAGCAGAAGGCAGTTATGTTGGCTGATATGGCACACATCAGTGGATTAGTTGCTGCAGGTGTTATTCCTTCTCCTTTTGATTATGCAGATGTTGTAACAACAACAACGCATAAGTCACTTCGTGGGCCACGTGGGGCTATGATATTCTTCAGGAAGGGTTTGAAAGAGATAAACAAGAAAGGGCAAGAAGTGTTTTATGACTACGAAGACAAGATAAATCAGGCTGTTTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACTATTACAGGCTTAGCAGTTGCATTGAAGCAGGCAATGACACCAGAATTCAAGAATTATCAAAAACAAGTTCTTAGTAACTCCTCAACATTTGCGCAGACTTTGTTAGAGCAAGGCTATGACCTTGTATCTGGTGGAACTGAGAACCATTTGGTGTTAGTGAACTTAAGAAACAAGGGCATTGATGGCTCGAGGGTTGAGAAGGTGTTAGAATCAGTTCATATAGCTGCCAATAAAAATACTGTTCCAGGTGATGTGTCTGCTATGGTTCCTGGGGGCATCAGAATGGGAACCCCTGCTCTCACATCTAGGGGTTTTGTTGAGGATGATTTTAAAAAAGTAGCTGAATACTTTGATGTGGCAGTCAAAATAGCCTTACAGATTAAGGAAAATGCTAAAGGCACCAAGTTGAAGGATTTTGTGGAAGCTATGCAGTCTGATTCTCAAATTCAATCTCAAATTGCTAATCTCCGCCGTGAAGTAGAGGATTATGCTAAGCAGTTTCCCACAATTGGTTTTGAGATAGAGACAATGAAGTATAATAAGTGA 1548 0.418 MAMALRKLSFSITNPTSPFTNTTTSLYRMSSSLSAQQNHKSNPDWIKQLNDPLEVIDPEIEDIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQMEKSAALFRPKLIVAGASAYARLYDYARIRKVCDKQKAVMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEINKKGQEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQAMTPEFKNYQKQVLSNSSTFAQTLLEQGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEDDFKKVAEYFDVAVKIALQIKENAKGTKLKDFVEAMQSDSQIQSQIANLRREVEDYAKQFPTIGFEIETMKYNK 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01220 515 Pfam Serine hydroxymethyltransferase 54 450 IPR039429 -
Car02g01220 515 Gene3D Aspartate Aminotransferase, domain 1 57 502 IPR015422 GO:0003824
Car02g01220 515 CDD SHMT 57 477 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Car02g01220 515 PIRSF SHMT 34 510 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Car02g01220 515 Coils Coil 480 500 - -
Car02g01220 515 Hamap Serine hydroxymethyltransferase [glyA]. 52 505 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Car02g01220 515 PANTHER SERINE HYDROXYMETHYLTRANSFERASE, MITOCHONDRIAL 4 514 - -
Car02g01220 515 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 4 514 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Car02g01220 515 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 276 292 IPR019798 GO:0030170
Car02g01220 515 Gene3D - 82 355 IPR015421 GO:0003824
Car02g01220 515 SUPERFAMILY PLP-dependent transferases 44 506 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01220 Car-Chr2 36934229 36940694 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01220 K00600 - gmx:100812952 906.746
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01220 02 36934229 36940694 Car02g01220 02 36934229 36940694 ECH