Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01211 ATGGATTCGGAAATTTTTCATACAATCTTAACCAAATCACTCACCGTCCTTGTCTGGCCTCCAATTAGTTTGCTTTGTCCCTTATACGTTTCTATTCGGGCATTGGAGAGTGATTGCCGTTCAAGTAATCAACGATGTCTTGCTTTTTGGGTTCTGTTTTATTTGTCTATGATCATGGAATGTGAATTTGCAGTGTTATTTACCTGGCCCCCATGGTGGCCTCATGCAAAAGCCATGGCAACTTTCCTTCTGTTAATACCTAATTTTGGTGCTGCGCTATACATCTACAAGTTCTTAATTAAACATTACTGTACTTGGAACATTTGTGCATGGACATTGAACATCTTTTATCAGAAAATCACACGTTTTGAATCAGATGAGGACAGCGAAAAACTTTCGGAACAAGAGGAGAAAAACTTAGTATATCAGGGAAGAGATGATCATGCTGATTGTGACAAGACAAAAAGCAGTTATGCAAGTAAAAAGCAAGTCCAAAAGGAATGGAGCTGTGCTTTATGTCAAATTAGTACTACAAGTGAAAATTGCTTAGTGGAACATCTTCAAGGGAAGCAACACAAAGCTAAGAAAAAAGAACTTCGAGTAGGGTTACGTTTAATTAATAGTCCGTATATGTTATCCTTTACGCAAGAAAGAATCAAAGGAATGACTCTACTTAAAAATCTCAACCAAATTGCAAACATTCTGAGTCCAGTTTCTACATCCACAATATGGTGTGAATGGAAAAAGCCGGAATTCGGATGGACAAAACTAAACACTGATGGTTCTGTAAATAAAGAAACTGCTGCTTTTGGCGGGCTGCTTCGTGATCACCGTGGCGAACCGATATGTGGTTTTGTCTCGAAAGCTCCTCAAGGAGATATTTTCTTGGTAGAACTTTGGGCTATATGGAGAGGCCTTGTTCTCTCTTTCGGTCTTGGGATTAAATCAATATGGGTTGAGTCAGACTCCATGAGTGTTGTCAAGACTATCAATAAAATGCAGCCTTGTCCGAAAGCTGAAAGTTGTTTGGAAAAAATATGGAAACTGTTGAGTAAGTTTGAAAAATATCGGATTTCGCACTCGTGGCGCGAGACTAATAGAGCAGCAGATCATCttgttggattttga 1128 0.3856 MDSEIFHTILTKSLTVLVWPPISLLCPLYVSIRALESDCRSSNQRCLAFWVLFYLSMIMECEFAVLFTWPPWWPHAKAMATFLLLIPNFGAALYIYKFLIKHYCTWNICAWTLNIFYQKITRFESDEDSEKLSEQEEKNLVYQGRDDHADCDKTKSSYASKKQVQKEWSCALCQISTTSENCLVEHLQGKQHKAKKKELRVGLRLINSPYMLSFTQERIKGMTLLKNLNQIANILSPVSTSTIWCEWKKPEFGWTKLNTDGSVNKETAAFGGLLRDHRGEPICGFVSKAPQGDIFLVELWAIWRGLVLSFGLGIKSIWVESDSMSVVKTINKMQPCPKAESCLEKIWKLLSKFEKYRISHSWRETNRAADHLVGF 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01211 375 Gene3D - 254 374 IPR036397 GO:0003676
Car02g01211 375 Pfam Zinc-finger of C2H2 type 168 192 - -
Car02g01211 375 SUPERFAMILY Ribonuclease H-like 254 373 IPR012337 -
Car02g01211 375 PANTHER PROTEIN A, PUTATIVE ISOFORM 1-RELATED 10 372 - -
Car02g01211 375 PANTHER HVA22-LIKE PROTEINS 10 372 IPR004345 -
Car02g01211 375 Pfam Reverse transcriptase-like 258 373 IPR002156 GO:0003676|GO:0004523
Car02g01211 375 Pfam TB2/DP1, HVA22 family 27 102 IPR004345 -
Car02g01211 375 CDD RNase_H_like 257 372 IPR044730 -
Car02g01211 375 Gene3D Classic Zinc Finger 152 202 - -
Car02g01211 375 SUPERFAMILY beta-beta-alpha zinc fingers 159 200 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01211 Car-Chr2 36675515 36679000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01211 246 373 Glycoside Hydrolase AT2G33160 27.481 8.95e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01211 - - lang:109359207 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01211 02 36675515 36679000 Car02g01211 02 36675515 36679000 ECH