Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01111 ATGTTTAACACTAACAAAGACAGAATCAATACAAAAGAAGACCCACCACATCTTAATTTTCCACCACCACAACCACATCTTAATTTTCCaccacaacaacaacaacaacaaccacctcaacaacaaTCACCTCATATGTCTcatcaacagcagcagcagcagcaTCCATCACATCCTCCTTTCAACCCTCGCTCAAATGGGTTTCCTTTTTGGTCCGATCAGAACCTGATCAACAACTTGAACATGGATCATGAAGATCATGATGAGTTGTCTATGAATCTTTCTGCAATGACCCTTTTGGATGAAGatcatcatcatcatcctcatcaccatcatcaaggtaacaacatcattatTAGTAAAAAGAAAAAAATCAGAGTAAACAACAATGTTGTTGATCCAATGAGTCATTGTTGGGATTTTCATGCACACAACAACACCACTCATGAAGATGAAACAGTACCATTAACCCCATCACGTTATCATAACATGGGTATACCAAAACCAACTATTGGGGTTTCAGTTTCTGAAGGTTTAATGCAGAAAGGTAACACCTTTAGAGTACCTCAAATCGGTTCTTCCACTGGCCATGTAAACAATGCTACTGCTTCTTATTATGGATGTGGTCATGGAAACAATGTTTCTTCTTCTGCTACTTATTATGGATGTGGTTATGGTAGAGGTGTTCCATACCAGCCTCAAAACACTTCTTTTGCTTCAACTTATTCTAACCCTTATGAACAACGTGTTGTTTATCCACCATTACCAAGAAGGTCTTTCCCAATGGAAAATGATATAAGATTAGGTTATGGTGTTGGAACAAATCCTGTCATGTACTCTACTCCAACCATGCCATTGCAACCAAACAATGCTCCTTCATCAACCCCTCTTTATTATAATCCCTTGAGGGAACTTCATCCTCCAACTAGACCTATTGAGGATAGTTTTATCCTACAAGAGAATAACATGAGAAGTGAGTGCAATTCATTGTTGGGTAGTGTTGGTGGTGTGGGTACAAGAAGGTATCCATTTTCACAAGAGGAAGTGATTCCTCAACTTGGTTCTCGTTTTCTTTCTAGACGTGAAAACGGTAGAGTTTTGGTGAGTAATAATGATGTGAATGAGGAGGATGATGATTTTCAGCAAAATTTGGGGATGAACTTTGGTTCTTGTTTGTCTGACCTTCAAAGCTATATGTCTCATATGGCAAAGGATCAGAATGGTTGTCGTTTTCTGCAGAAGATGGTTGCTGAAGGAACTCCTGAAGATATGGAAATGGTGTTTAATGGAGTTATTGATAATGTTGTTGAGCTTATGATGGACCCTTTTGGGAATTATCTTGTGCAAAAATTGCTTGAGTTTTGTAGGGATGAACAAAGGTTTCAGATTGTGCTTATGTTGACTAGAGAACCTGGTCAGCTAGTCAGAACCTCGTTAAACACACACGGGACAAGAGTGGTTCAGAAGCTGATTTCGACCCTCAAATCAAGGAGGCAAATTGCATTAGTGAGGTCTGCAATTCTACCTGGTTTTCTTGATCTAATTAAGGATTTGAATGGAAATCATGTCATACAACGTTGCTTGCAATGTCTAAGTGTTCAAGATAATGAGCTCATACATGATGCTGCTACTAAGTTCTTGGTTGAGGTAGCTACTCAACAACATGAAGTATGCAAAAATGGCTTCTTTCTTGCTCAAGATGCATATGGAAATTATGTTGTGCAGTTTATCATAGAGATGCAGTATCCAAGTGCCATAGTTAAATTGACTAATCAGTTCAAAGGAAACTATGTAAGCCTCTCCATGCAAAAGTTTAGTAGCCATGTGGTTGAAAAGTGCCTCACATATATTGCGGAGACTAGAGCAAGGATAGTTCAAGAATTGCTCTCTGTTTCTCATTTTGAGCAGATGCTCCAAGACCCATATGCCAACTATGTTGTTCAAAAAGCTCTCGAACTAACCACAGTATGA 1971 0.3663 MFNTNKDRINTKEDPPHLNFPPPQPHLNFPPQQQQQQPPQQQSPHMSHQQQQQQHPSHPPFNPRSNGFPFWSDQNLINNLNMDHEDHDELSMNLSAMTLLDEDHHHHPHHHHQGNNIIISKKKKIRVNNNVVDPMSHCWDFHAHNNTTHEDETVPLTPSRYHNMGIPKPTIGVSVSEGLMQKGNTFRVPQIGSSTGHVNNATASYYGCGHGNNVSSSATYYGCGYGRGVPYQPQNTSFASTYSNPYEQRVVYPPLPRRSFPMENDIRLGYGVGTNPVMYSTPTMPLQPNNAPSSTPLYYNPLRELHPPTRPIEDSFILQENNMRSECNSLLGSVGGVGTRRYPFSQEEVIPQLGSRFLSRRENGRVLVSNNDVNEEDDDFQQNLGMNFGSCLSDLQSYMSHMAKDQNGCRFLQKMVAEGTPEDMEMVFNGVIDNVVELMMDPFGNYLVQKLLEFCRDEQRFQIVLMLTREPGQLVRTSLNTHGTRVVQKLISTLKSRRQIALVRSAILPGFLDLIKDLNGNHVIQRCLQCLSVQDNELIHDAATKFLVEVATQQHEVCKNGFFLAQDAYGNYVVQFIIEMQYPSAIVKLTNQFKGNYVSLSMQKFSSHVVEKCLTYIAETRARIVQELLSVSHFEQMLQDPYANYVVQKALELTTV 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01111 656 MobiDBLite consensus disorder prediction 30 72 - -
Car02g01111 656 MobiDBLite consensus disorder prediction 1 72 - -
Car02g01111 656 ProSiteProfiles Pumilio RNA-binding repeat profile. 469 504 IPR001313 GO:0003723
Car02g01111 656 PANTHER PUMILIO-FAMILY RNA-BINDING REPEATPROTEIN 53 655 - -
Car02g01111 656 Pfam Pumilio-family RNA binding repeat 474 494 IPR001313 GO:0003723
Car02g01111 656 Pfam Pumilio-family RNA binding repeat 596 629 IPR001313 GO:0003723
Car02g01111 656 Pfam Pumilio-family RNA binding repeat 511 535 IPR001313 GO:0003723
Car02g01111 656 Pfam Pumilio-family RNA binding repeat 637 652 IPR001313 GO:0003723
Car02g01111 656 Pfam Pumilio-family RNA binding repeat 434 464 IPR001313 GO:0003723
Car02g01111 656 Pfam Pumilio-family RNA binding repeat 401 430 IPR001313 GO:0003723
Car02g01111 656 Pfam Pumilio-family RNA binding repeat 564 579 IPR001313 GO:0003723
Car02g01111 656 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 369 656 IPR033133 GO:0003723
Car02g01111 656 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 53 655 - -
Car02g01111 656 CDD Pumilio 402 655 IPR033712 GO:0003723
Car02g01111 656 Gene3D - 557 656 IPR011989 -
Car02g01111 656 ProSiteProfiles Pumilio RNA-binding repeat profile. 430 466 IPR001313 GO:0003723
Car02g01111 656 ProSiteProfiles Pumilio RNA-binding repeat profile. 394 429 IPR001313 GO:0003723
Car02g01111 656 ProSiteProfiles Pumilio RNA-binding repeat profile. 506 541 IPR001313 GO:0003723
Car02g01111 656 SMART pum_5 592 626 IPR001313 GO:0003723
Car02g01111 656 SMART pum_5 430 465 IPR001313 GO:0003723
Car02g01111 656 SMART pum_5 629 656 IPR001313 GO:0003723
Car02g01111 656 SMART pum_5 469 504 IPR001313 GO:0003723
Car02g01111 656 SMART pum_5 506 540 IPR001313 GO:0003723
Car02g01111 656 SMART pum_5 394 429 IPR001313 GO:0003723
Car02g01111 656 SMART pum_5 556 591 IPR001313 GO:0003723
Car02g01111 656 ProSiteProfiles Pumilio RNA-binding repeat profile. 627 656 IPR001313 GO:0003723
Car02g01111 656 Gene3D - 379 556 IPR011989 -
Car02g01111 656 ProSiteProfiles Pumilio RNA-binding repeat profile. 556 591 IPR001313 GO:0003723
Car02g01111 656 SUPERFAMILY ARM repeat 388 654 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01111 Car-Chr2 31403558 31406795 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01111 - - mtr:MTR_5g063650 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01111 02 31403558 31406795 Car02g01111 02 31403558 31406795 ECH