Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00980 ATGAAATCAACGGTTGAAGGATCGATGGTAGCTGAGAGGTTTGATGATGGTGAAAAGGATAAGAAGAAGAAGCGCCGATCCAATCGTCGAGCCAAGCAAAACCCTCCTTCATCTTCAGCATCTGAAGTAAACGAGGCTATTGGGGTGTCCTCGGAATGCTTCGAGAAAAATGGAACACCTACTCAAACAACTGGATCATTTAGCAATTCACTGAAGCAGCAGGGTGTTAATGTTTCATCCTCTAATGAACAAGGATTATCCAAAGCATCCATTGTTGAATCTGTTTCGACGGTTCTCACACATCTCAATGACCGGGTTGAACCTGTTGATATGAAAAACATGCAAATACATGAAGGAGGAATTGATCCAAAACTGTGTTTGGTTCCTTGCAGTCCCATGCATCTTAATGCCCAGAGAAATTATTTTAGTCCACATTGGTCTGTAGAGGCTGTGGAGAAAGAATTGGAGAAGGGTGATGTCTATAAAGCTGTCTTTCATGTCAATGCTCACAATAAACTTGAGGCCTACTGCAAAATTGAAGGAGTGCCAACGGATATTCTCATTGGTGGGGTTCCAGCCCAGAATAGAGCTGTGGAAGGTGACATTGTTGCAATTAAGATTGATCCTTTGCCATTGTGGACAAAAATGAAAGGAGTAAATGGGGGTAGCAACAATACCGAAGTACGTGATGGTTGTAATGTTCTTGTGGAAGATAGTAATGTAAGTGACAATAACCACGGGACTTCCATGCACAGAAGCTCTCTTGGTCAAAACAAGGAGGAATCTTATCAAAACTCTTCTCCTTGTAGGAATTATCCATTTTCTGAGAAAAGGTACATTTATGAGGATAACACTGCACAGGGTTTGGCCAACCATTTAAGTCTAGTTGCACTAGCCGGCTGTGATAGCAATAATGGACTTCACTTTGAAGGATCTGCTTCATTGAAGATTAATTCTGGTGGTGGACAGAGTGAAGTTATGAATGTGGTGAAGCAGTTGTGTTTGTTGGTTAATTCATTCCCTTCTAAAAGACCAACTGGCAGGGTGGTTGCTATTATTGAGAGGTCTCCACGTCGAGAGTGTATTGTTGGTCATCTTAATCTGAAGCAATGTGGTCTTTTTCAGGACATAAACAAGAAAGATGCAAGAAAGAATAAGAATTTTGTTTCTGAGCATGAATACATCCAACTGCTGCCAATTGATCCAAAGTTTCCTAACATAAAACTTCTTGTCAGAGAGTTACCAGAGAATATTAAGAGAAGGCTGAAAAGTGACGATGCAACAATTGAAATGGATCTGGTAGCTGCACAACTTGATGATTGGGTAGGAGAAAGTCCTTTTCCTGAGGGTCATATCTTGCATGTTTTTGGACGAGGTAGTGAACTTCAGCCCCAATTAGATGCTATTTTGTTTCAGAATGAAATCTGTTTTTCAGAATTTTCACCTGAAGCTCTGTCCTGTCTGCCATGTCTTCCTTGGGAGTTACCATTAAAGGAATTGAAAAGTCGAACTGATCTTAGAAATTTGTGCATATTTACTATTGATCCTTCAACTGCAATTGATCTGGATGATGCACTGTCAATTGAGAAGTTGCCTAATGGAAATTATAGAGTAGGCATCCATATTGCTGATGCATCTTACTTTGTTCTACCAGATACAGCTTTAGATAAGGAGGCTCAGCTACGGTCAACGAGCGTTTATATGTTGCAAAAGAAGTTATCAATGTTGCCTGCATTAATCTCCGACAATATTGGATCACTTAATCCTGGAGTGGATCGGCTTGCAGTTTCCATGCTCCTGGATGTAACTGTTGCTGGGGAGGTTGTGGACCGTTGGATCGGTCGTACTGTTATTAAATCTTGTTGTAAGCTTTCATATGAAAATGCGCAAGACATCATTGATAAGGCTTTTGATTTTGAGAGATCAAACATTTATGAGGATAACTATCCTAAAGTGCATGGCCATTTTGTATGGCCTGATGTAATTACATCTCTGAAGAGTCTATATGAAATTTCAAATGTCTTGAAACGTAAGAGATTTACTGAAGGGGCTCTGCGGCTTAATACTCCCAAAATCGTTATCCTGTTTGATGAGAATGGCATTCCTTATGATAGTATGTTTTCTGAACAGAAAGAATCAAATTTTCTTATTGAGGAATTTATGCTTTTGGCCAATACAACAGCGGCTGAAATCATATCTAGAGCTTATCCTAATGTTTCACTATTGCGGAGGCATCCTGAACCTAATATGCGAAAGCTGAGAGAGTTTTCTGCATTTTGTCAGAAGCATGGCTTTAATTTGGACATTTCTTCATCAGGTCAGATCCATTGGTCCTTAGAGAAAATAAAGGAAAAGCTCAATGGTGACCCTGTGTTTTACGATATTCTTATTTCCTATGCTACAAGGCCAATGCAGTTGGCATCTTACTTTTGTAGTGGCGATTTAAAGGACAATGAACATGAATGGGCTCATTATTCACTTGCTGTCCCTTTATACACTCATTTTACATCACCTTTACGACGATATTCAGATATTGTTGTTCATCGGACACTACTTGCTACGATAGAGGCTGAGGAAAAATATTTGAAGCAGGTGGCAAGGGAAGTGGAAGTGAAAAATAGATGTTTCACAGGAATCTACTTTGATAAAAAAGCTGCTGAATCTGTTGAAGGTAAGGAAGCTTTATCAGCTGCAGCTTTGAAGCATAGGGTTCCAAGTGCTAAAATACTTGGAAATATTGCTGCTCATTGCAATGACAGAAAGCTAGCTAGTAGATATGTTAAGGATGCCTGTGATAGACTTTACATGTGGTATCTCCTGAAGCATCAGAAGGTCTTGTTATCAGAAGCAAGAATAATGGGACTAGGCCCAAAATTCATGTCAGTTTATATTCAGAAGCTAGCTATTGAGAAACGCATATATTATGATGAAGTTGAAGGTTTGACTGCAGAGTGGCTCGAGGCAACGTCCACATTGGTGCTTAGCATGTCTCTTAATAAGCGTGCATTAAGGAGGGGAAGCCCTAACAAATGGAGGGCATTGTCAGAAGTTGCATTGATTGCCTGTCCATATGACCTGAAAGTTACAGTGGATAGTTCTGATCAATGTGATTTGGAAGTGGATGCTATGGTATCTAACACAAACCAGCAACATATTTCAATATCTGACTCTTCTGTGGCTGAAATTGAGCCTGCGGTTTTTCCACTCACAGTGCATCTCCTTTCAAAAATTCCTGTAGCACTTCATGCTGTTGGTGGTGATGATGGGCCTCTTGATTTTGGGGTTAGGATGTACATGAGCTCATATATGTGGTGA 3315 0.4009 MKSTVEGSMVAERFDDGEKDKKKKRRSNRRAKQNPPSSSASEVNEAIGVSSECFEKNGTPTQTTGSFSNSLKQQGVNVSSSNEQGLSKASIVESVSTVLTHLNDRVEPVDMKNMQIHEGGIDPKLCLVPCSPMHLNAQRNYFSPHWSVEAVEKELEKGDVYKAVFHVNAHNKLEAYCKIEGVPTDILIGGVPAQNRAVEGDIVAIKIDPLPLWTKMKGVNGGSNNTEVRDGCNVLVEDSNVSDNNHGTSMHRSSLGQNKEESYQNSSPCRNYPFSEKRYIYEDNTAQGLANHLSLVALAGCDSNNGLHFEGSASLKINSGGGQSEVMNVVKQLCLLVNSFPSKRPTGRVVAIIERSPRRECIVGHLNLKQCGLFQDINKKDARKNKNFVSEHEYIQLLPIDPKFPNIKLLVRELPENIKRRLKSDDATIEMDLVAAQLDDWVGESPFPEGHILHVFGRGSELQPQLDAILFQNEICFSEFSPEALSCLPCLPWELPLKELKSRTDLRNLCIFTIDPSTAIDLDDALSIEKLPNGNYRVGIHIADASYFVLPDTALDKEAQLRSTSVYMLQKKLSMLPALISDNIGSLNPGVDRLAVSMLLDVTVAGEVVDRWIGRTVIKSCCKLSYENAQDIIDKAFDFERSNIYEDNYPKVHGHFVWPDVITSLKSLYEISNVLKRKRFTEGALRLNTPKIVILFDENGIPYDSMFSEQKESNFLIEEFMLLANTTAAEIISRAYPNVSLLRRHPEPNMRKLREFSAFCQKHGFNLDISSSGQIHWSLEKIKEKLNGDPVFYDILISYATRPMQLASYFCSGDLKDNEHEWAHYSLAVPLYTHFTSPLRRYSDIVVHRTLLATIEAEEKYLKQVAREVEVKNRCFTGIYFDKKAAESVEGKEALSAAALKHRVPSAKILGNIAAHCNDRKLASRYVKDACDRLYMWYLLKHQKVLLSEARIMGLGPKFMSVYIQKLAIEKRIYYDEVEGLTAEWLEATSTLVLSMSLNKRALRRGSPNKWRALSEVALIACPYDLKVTVDSSDQCDLEVDAMVSNTNQQHISISDSSVAEIEPAVFPLTVHLLSKIPVALHAVGGDDGPLDFGVRMYMSSYMW 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00980 1104 Gene3D - 369 461 - -
Car02g00980 1104 Hamap DIS3-like exonuclease 2 [DIS3L2]. 21 1079 IPR028591 GO:0000175|GO:0034427
Car02g00980 1104 PANTHER RIBONUCLEASE 21 1102 - -
Car02g00980 1104 ProSitePatterns Ribonuclease II family signature. 824 848 IPR022966 -
Car02g00980 1104 Pfam Dis3-like cold-shock domain 2 (CSD2) 394 473 IPR041505 -
Car02g00980 1104 Gene3D - 134 237 - -
Car02g00980 1104 MobiDBLite consensus disorder prediction 1 45 - -
Car02g00980 1104 SUPERFAMILY Nucleic acid-binding proteins 465 942 IPR012340 -
Car02g00980 1104 Pfam RNB domain 503 855 IPR001900 GO:0003723|GO:0004540
Car02g00980 1104 MobiDBLite consensus disorder prediction 238 268 - -
Car02g00980 1104 SUPERFAMILY Nucleic acid-binding proteins 140 355 IPR012340 -
Car02g00980 1104 PANTHER DIS3-LIKE EXONUCLEASE 2 21 1102 - -
Car02g00980 1104 SMART RNB_2 503 857 IPR001900 GO:0003723|GO:0004540
Car02g00980 1104 SUPERFAMILY Nucleic acid-binding proteins 346 476 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00980 Car-Chr2 17804275 17811106 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00980 K18758 - gmx:100817387 1535.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00980 02 17804275 17811106 Car02g00980 02 17804275 17811106 ECH