Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00710 ATGAAGTTGAAGAGTGACATAATAACAACACTCAGAAAACTAGTTCAAGATGGTTTATACAAAGAAGCTCTTCACTTCTATTCCCACCTCCACCACTCTTCCTCCCACACTCCTCACTCCTTCACATTCCCCATTCTCCTCAAAGCATGCTCCAATCTCTCTCCCTCTTCCCCTTCCCAATCGCAAATCCTCCATGCCCATCTCTTCAAAACCGGTTTCTACTCTCACCCTCACACCACCACCGCCCTCACCGCCGCATACGCCGCCAACCCTATCTCTTTCCCAGACGCCCTCAAACTGTTCGACGAAATGTCCCAACCAACTATCACCGCTTTCAACGCCGCACTTTCCGGACTCTCCCGAAATGGACCTCCGGGACAAGCTATTGAGCTTTTCCGTCAAATTGGGCTTCGTACTCTGAGGCCCAATTCTGTCACTATCGCTTCTCTTCTCACTGCACGTGATACAAAAAATCCAAGTCACGTGCACCAAGTTCATTGCTTGGCGCTTAAGTTAGGAGTTGAAAATGATGTCTACGTTTCCACCTCGCTTATTACTTGTTATTCCAAAAGTGGAAATTTGGTTTCTTCGAAAAACGTTTTTGAAAATTCGCACGTGAGAAATGTGGTTACTTACAATGCTTTTATGTCGGGGTTGTTACCAAACGGATTTCCTCGTATTGTTGTCGATGTTTTTAAGGATATGATGATGAGTTTGGAGGAAAAGCCGAATATGGTTACTTTCGTGTCTGTTTTTTCAGCTTGTGCTAACCTTTTGAACATTCGTTTAGGGAAGCAGGTTCATGGGCTTAGTATGAAACTAGAAGCATGTGATCATGTTATGGTGGTGACTTCACTTGTGGACATGTATTCAAAATGTGGTTGTTGGCGTTCTGCTTTTGATGTTTTTAATGAAGGTGAAAAGAGGAACTTGATCACTTGGAACTCTATGATTGCAGGGTTGATGATGAATGAAGAGATTGAGAAGGGTGTTGATGTGTTTGAGAGGATGGTGAGTGAAGGGGTTTTGCCTGATTCGGCAACCTGGAACACTTTGATTGGTGGATTTGCACAAAAAGGGTTGTTTTTGGAAGCTTTTAAGTATTTTAGGAAAATGCAGTATTTTGGTGTGGTTCCATGTTTGAAGATTGTTACTAGTATTTTGTCTGTGTGTGCTGATTCGTCTGTGTTGCGAAGTGGGAAAGAGATACACGGGTATGCTGTGAGAATTTGTGTTGATATGGATGAATTTTTCGCAACTGCTCTGGTTGATATGTACATGAAATGTGGGTGTGTTTCTTTGGCTCGTTGTATTTTTGATCAGTTTGATGAAAAACCAGATGACCCTGCATTTTGGAATGCAATGATAGGAGGGTATGGAAGGAATGGAGATTATGAGTCTGCTTTTGAAATCTTTGATGAAATGTTGGCTGAAATGGTGAAACCAAATAGTGTAACATTTGTTAGTGTTCTGTCGGCTTGTAGCCACAGTGGTCAAGTTGAGAGAGGATTACATGTTTTCAGGATGATTAGAGAGTTTGGTTTGGATCCAAAGCCTGCGCATTTTGGGTGTGTGGTTGATCTTTTGGGTCGATCTGGTCGGTTAGGCGAAGCTCGAGAGTTGGTGCGAGAATTAGCAGAACCTCCTGCATCTGTTTTTGATTCTTTGCTTGGTGCATCTAGGTGCTACTTAGATTCAAATCTTGGGGAAGAAATGGCCATGAAACTTGTTGATCTCGAGCGGGAAAATCCGGCTCCGCTGGTGGTTTTGTCTAACATATATGCTGCATTGGGAAGATGGAGAGAAGTAGAAAGGATAAGAGGGTTGATCACAGATATAAGATTGGACAAACTATCTGGTGTTAGCATGATAGAAGTTGCATGA 1884 0.4278 MKLKSDIITTLRKLVQDGLYKEALHFYSHLHHSSSHTPHSFTFPILLKACSNLSPSSPSQSQILHAHLFKTGFYSHPHTTTALTAAYAANPISFPDALKLFDEMSQPTITAFNAALSGLSRNGPPGQAIELFRQIGLRTLRPNSVTIASLLTARDTKNPSHVHQVHCLALKLGVENDVYVSTSLITCYSKSGNLVSSKNVFENSHVRNVVTYNAFMSGLLPNGFPRIVVDVFKDMMMSLEEKPNMVTFVSVFSACANLLNIRLGKQVHGLSMKLEACDHVMVVTSLVDMYSKCGCWRSAFDVFNEGEKRNLITWNSMIAGLMMNEEIEKGVDVFERMVSEGVLPDSATWNTLIGGFAQKGLFLEAFKYFRKMQYFGVVPCLKIVTSILSVCADSSVLRSGKEIHGYAVRICVDMDEFFATALVDMYMKCGCVSLARCIFDQFDEKPDDPAFWNAMIGGYGRNGDYESAFEIFDEMLAEMVKPNSVTFVSVLSACSHSGQVERGLHVFRMIREFGLDPKPAHFGCVVDLLGRSGRLGEARELVRELAEPPASVFDSLLGASRCYLDSNLGEEMAMKLVDLERENPAPLVVLSNIYAALGRWREVERIRGLITDIRLDKLSGVSMIEVA 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00710 627 Pfam E motif 563 625 IPR046848 -
Car02g00710 627 Pfam PPR repeat family 451 495 IPR002885 -
Car02g00710 627 Pfam PPR repeat family 310 357 IPR002885 -
Car02g00710 627 Pfam PPR repeat family 207 257 IPR002885 -
Car02g00710 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 482 IPR002885 -
Car02g00710 627 PANTHER OS07G0578800 PROTEIN-RELATED 12 622 IPR045215 GO:0003723|GO:0009451
Car02g00710 627 TIGRFAM PPR: pentatricopeptide repeat domain 312 346 IPR002885 -
Car02g00710 627 TIGRFAM PPR: pentatricopeptide repeat domain 452 483 IPR002885 -
Car02g00710 627 TIGRFAM PPR: pentatricopeptide repeat domain 485 517 IPR002885 -
Car02g00710 627 TIGRFAM PPR: pentatricopeptide repeat domain 348 379 IPR002885 -
Car02g00710 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 142 IPR002885 -
Car02g00710 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Car02g00710 627 Gene3D Tetratricopeptide repeat domain 5 155 IPR011990 GO:0005515
Car02g00710 627 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 12 622 - -
Car02g00710 627 Gene3D Tetratricopeptide repeat domain 268 404 IPR011990 GO:0005515
Car02g00710 627 Gene3D Tetratricopeptide repeat domain 156 267 IPR011990 GO:0005515
Car02g00710 627 Pfam PPR repeat 182 202 IPR002885 -
Car02g00710 627 Pfam PPR repeat 111 134 IPR002885 -
Car02g00710 627 Gene3D Tetratricopeptide repeat domain 417 612 IPR011990 GO:0005515
Car02g00710 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Car02g00710 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 483 517 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00710 Car-Chr2 9413730 9417310 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00710 38 627 Glycoside Hydrolase AT3G49170 28.428 5.44e-74 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00710 - - aprc:113868723 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00710 02 9413730 9417310 Car02g00710 02 9413730 9417310 ECH